PDK_20s1329112g001 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1329112g001 T58070_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1329112g001 RRM 41 106

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29680.m001693 Ricinus communis 29680.m001693 I 0.845
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.817
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.817
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.817
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.817
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.831
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.859
cassava22670.valid.m1 Manihot esculenta cassava22670.valid.m1 N 0.708
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.831
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.817
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.817
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.831
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.789
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.831
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.831
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.789
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.831
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.817
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.792
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.775
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.803
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.817
MDP0000283678 Malus x domestica MDP0000283678 I 0.817
MDP0000320908 Malus x domestica MDP0000320908 I 0.817
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.817
mgf008981m Mimulus guttatus mgf008981m I 0.708
mgf018525m Mimulus guttatus mgf018525m I 0.732
mgf021739m Mimulus guttatus mgf021739m I 0.817
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.817
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.817
PK16312.1 Cannabis sativa PK16312.1 I 0.817
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.789
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.803
ppa010477m Prunus persica ppa010477m I 0.817
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.831
SB04G026430 Sorghum bicolor Sb04g026430 I 0.789