CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1329112g001
(
Phoenix dactylifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PDK_20s1329112g001
T58070_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1329112g001
RRM
41
106
LFCGDLGNEVNDDVLTKAFARFQSFNMARRTGKTKGYGFVSFSNASDLTAALKEMNGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Phoenix dactylifera
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava22669.valid.m1
Manihot esculenta
cassava22669.valid.m1
I
0.859
29680.m001693
Ricinus communis
29680.m001693
I
0.845
Glyma10g30900.1
Glycine max
Glyma10g30900.1
I
0.831
Cucsa.178480
Cucumis sativus
Cucsa.178480
I
0.831
Sb02g038420
Sorghum bicolor
Sb02g038420
I
0.831
Glyma20g36570.1
Glycine max
Glyma20g36570.1
I
0.831
GSVIVG00016104001
Vitis vinifera
GSVIVG00016104001
I
0.831
BRADI3G49130
Brachypodium distachyon
BRADI3G49130
I
0.831
GRMZM2G068255
Zea mays
GRMZM2G068255
I
0.831
MDP0000283678
Malus x domestica
MDP0000283678
I
0.817
PK16312.1
Cannabis sativa
PK16312.1
I
0.817
MDP0000320908
Malus x domestica
MDP0000320908
I
0.817
Medtr1g093610
Medicago truncatula
Medtr1g093610
I
0.817
e_gw1.156.67.1
Physcomitrella patens
e_gw1.156.67.1
I
0.817
PDK_20s1301681g005
Phoenix dactylifera
PDK_20s1301681g005
I
0.817
mgf021739m
Mimulus guttatus
mgf021739m
I
0.817
PDK_20s1323974g003
Phoenix dactylifera
PDK_20s1323974g003
I
0.817
ppa010477m
Prunus persica
ppa010477m
I
0.817
BRADI3G12840
Brachypodium distachyon
BRADI3G12840
I
0.817
BGIOSIBCE028936
Oryza indica
BGIOSIBCE028936
I
0.817
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.817
AT3G04500
Arabidopsis thaliana
AT3G04500-TAIR-G
I
0.817
XM_002884402.1
Arabidopsis lyrata
fgenesh2_kg.3__407__AT3G04500.1
I
0.817
GSVIVG00023509001
Vitis vinifera
GSVIVG00023509001
I
0.817
LOC_Os08g45240
Oryza sativa
LOC_Os08g45240
I
0.817
LOC_Os02g40900
Oryza sativa
LOC_Os02g40900
I
0.803
B9IPA5_POPTR
Populus trichocarpa
POPTR_0019s03570
I
0.803
gw1.0.1780.1
Selaginella moellendorfii
gw1.0.1780.1
I
0.792
B9I5N8_POPTR
Populus trichocarpa
POPTR_0013s04390
I
0.789
Glyma11g01300.1
Glycine max
Glyma11g01300.1
I
0.789
GRMZM2G125529
Zea mays
GRMZM2G125529
I
0.789
SB04G026430
Sorghum bicolor
Sb04g026430
I
0.789
LjSGA_021949.1
Lotus japonicus
LjSGA_021949.1
I
0.775
mgf018525m
Mimulus guttatus
mgf018525m
I
0.732
cassava22670.valid.m1
Manihot esculenta
cassava22670.valid.m1
N
0.708
mgf008981m
Mimulus guttatus
mgf008981m
I
0.708