mgf018525m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf018525m T53767_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.732
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
mgf018525m RRM 66 136

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf008981m Mimulus guttatus mgf008981m I 0.958
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.831
PK16312.1 Cannabis sativa PK16312.1 I 0.831
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.831
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.831
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.831
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.817
29680.m001693 Ricinus communis 29680.m001693 I 0.817
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.817
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.817
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.817
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.817
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.803
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.803
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.803
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.803
mgf021739m Mimulus guttatus mgf021739m I 0.803
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.803
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.803
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.803
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.803
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.803
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.789
ppa010477m Prunus persica ppa010477m I 0.789
MDP0000320908 Malus x domestica MDP0000320908 I 0.789
MDP0000283678 Malus x domestica MDP0000283678 I 0.789
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.775
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.775
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.761
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.746
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.736
RBM42 Oryzias latipes ENSORLG00000003387 I 0.732
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.732
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.732
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.732
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.732
PDK_20s1329112g001 Phoenix dactylifera PDK_20s1329112g001 N 0.732
SB04G026430 Sorghum bicolor Sb04g026430 I 0.732
AAI29698 Xenopus laevis AAI29698 I 0.732
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.732
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.732
A2VDB3 Xenopus laevis A2VDB3 I 0.732
rbm42 Danio rerio ENSDARG00000039910 I 0.718
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.718
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.704
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.704
RBM42 Sus scrofa ENSSSCG00000002905 I 0.704
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.704
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.704
RBM42 Homo sapiens ENSG00000126254 D 0.704
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.704
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.704
LOC100051102 Equus caballus ENSECAG00000018215 I 0.704
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.704
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.704
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.704
RBM42 Canis familiaris ENSCAFG00000006925 I 0.704
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.704
RBM42 Microcebus murinus ENSMICG00000009880 I 0.704
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.704
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.704
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.704
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.704
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.704
RBM42 Procavia capensis ENSPCAG00000013053 I 0.704
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.704
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.704
Rbm42 Mus musculus ENSMUSG00000036733 I 0.704
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.704
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.704
RBM42 Sorex araneus ENSSARG00000010724 I 0.704