XP_001177907.1 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_001177907.1 T58844_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.736
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.736
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.736
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001177907.1 RRM 13 83
XP_001177907.1 RRM 101 170
XP_001177907.1 RRM 194 262
XP_001177907.1 RRM 296 365

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH70649 Xenopus laevis AAH70649 I 0.000
Ame_R008043 Ailuropoda melanoleuca Ame_R008043 I 0.000
ENSACAG00000009551 Anolis carolinensis ENSACAG00000009551 I 0.000
HNRPG_BOVIN Bos taurus ENSBTAG00000011807 I 0.000
D3JUI8_BOVIN Bos taurus ENSBTAG00000013308 I 0.000
HNRPG_BOVIN Bos taurus ENSBTAG00000036140 I 0.000
RBMXL1 Canis familiaris ENSCAFG00000018962 I 0.000
LOC100406653 Callithrix jacchus ENSCJAG00000003626 I 0.000
ENSCJAG00000013619 Callithrix jacchus ENSCJAG00000013619 I 0.000
ENSCJAG00000016247 Callithrix jacchus ENSCJAG00000016247 I 0.000
LOC100415631 Callithrix jacchus ENSCJAG00000022240 I 0.000
RBMXL1 Callithrix jacchus ENSCJAG00000032899 I 0.000
RBMX Cavia porcellus ENSCPOG00000012164 I 0.000
rbmx Danio rerio ENSDARG00000014244 I 0.000
ENSDNOG00000009042 Dasypus novemcinctus ENSDNOG00000009042 I 0.000
RBMXL1 Dasypus novemcinctus ENSDNOG00000017199 I 0.000
Rbmxl2 Dipodomys ordii ENSDORG00000010267 I 0.000
LOC100054583 Equus caballus ENSECAG00000021380 I 0.000
RBMX Homo sapiens ENSG00000147274 D 0.000
RBMXL2 Homo sapiens ENSG00000170748 I 0.000
RBMXL3 Homo sapiens ENSG00000175718 I 0.000
RBMXL1 Homo sapiens ENSG00000213516 I 0.000
RBMXL3 Gasterosteus aculeatus ENSGACG00000017237 I 0.000
Q5ZKQ9_CHICK Gallus gallus ENSGALG00000006457 I 0.000
Q2VIN1_9PRIM Gorilla gorilla ENSGGOG00000012016 I 0.000
RBMXL1 Gorilla gorilla ENSGGOG00000027619 I 0.000
ENSLAFG00000005568 Loxodonta africana ENSLAFG00000005568 I 0.000
ENSLAFG00000014037 Loxodonta africana ENSLAFG00000014037 I 0.000
ENSLAFG00000020807 Loxodonta africana ENSLAFG00000020807 I 0.000
ENSLAFG00000022169 Loxodonta africana ENSLAFG00000022169 I 0.000
O97560_MACEU Macropus eugenii ENSMEUG00000013834 I 0.000
ENSMEUG00000015892 Macropus eugenii ENSMEUG00000015892 I 0.000
RBMX Meleagris gallopavo ENSMGAG00000003594 I 0.000
RBMXL1 Microcebus murinus ENSMICG00000006856 I 0.000
RBMXL1 Myotis lucifugus ENSMLUG00000013209 I 0.000
XM_001367159.1 Monodelphis domestica ENSMODG00000014054 I 0.000
Rbmx Mus musculus ENSMUSG00000031134 I 0.000
Rbmxrt Mus musculus ENSMUSG00000037070 I 0.000
ENSMUSG00000049235 Mus musculus ENSMUSG00000049235 I 0.000
Rbmxl2 Mus musculus ENSMUSG00000073894 I 0.000
ENSOANG00000011670 Ornithorhynchus anatinus ENSOANG00000011670 I 0.000
RBMXL1 Oryctolagus cuniculus ENSOCUG00000007220 I 0.000
ENSOCUG00000021095 Oryctolagus cuniculus ENSOCUG00000021095 I 0.000
RBMX Oryctolagus cuniculus ENSOCUG00000024093 I 0.000
ENSOCUG00000028230 Oryctolagus cuniculus ENSOCUG00000028230 I 0.000
RBMXL3 Oryzias latipes ENSORLG00000001692 I 0.000
ENSPPYG00000001177 Pongo pygmaeus ENSPPYG00000001177 I 0.000
ENSPPYG00000019152 Pongo pygmaeus ENSPPYG00000019152 I 0.000
ENSPPYG00000020771 Pongo pygmaeus ENSPPYG00000020771 I 0.000
HNRPG_PANTR Pan troglodytes ENSPTRG00000000933 I 0.000
RBMXL2 Pan troglodytes ENSPTRG00000003312 I 0.000
XR_023586.1 Pan troglodytes ENSPTRG00000004121 I 0.000
LOC750990 Pan troglodytes ENSPTRG00000028802 I 0.000
Q52NW1_PANTR Pan troglodytes ENSPTRG00000028822 I 0.000
XR_020119.1 Pan troglodytes ENSPTRG00000028826 I 0.000
XR_019934.1 Pan troglodytes ENSPTRG00000032589 I 0.000
ENSPTRG00000032590 Pan troglodytes ENSPTRG00000032590 I 0.000
XR_020159.1 Pan troglodytes ENSPTRG00000032591 I 0.000
RBMX Pan troglodytes ENSPTRG00000034071 I 0.000
Rbmx Rattus norvegicus ENSRNOG00000000866 I 0.000
Rbmxrtl Rattus norvegicus ENSRNOG00000012138 I 0.000
D3ZT57_RAT Rattus norvegicus ENSRNOG00000021946 I 0.000
D4AE41_RAT Rattus norvegicus ENSRNOG00000028858 I 0.000
RBMXL1 Sus scrofa ENSSSCG00000012703 I 0.000
ENSTBEG00000001154 Tupaia belangeri ENSTBEG00000001154 I 0.000
RBMX Taeniopygia guttata ENSTGUG00000002135 I 0.000
RBMXL3 Tetraodon nigroviridis ENSTNIG00000016844 I 0.000
RBMXL3 Takifugu rubripes ENSTRUG00000006031 I 0.000
RBMX Tarsius syrichta ENSTSYG00000009555 I 0.000
ENSTTRG00000003238 Tursiops truncatus ENSTTRG00000003238 I 0.000
RBMXL1 Tursiops truncatus ENSTTRG00000007322 I 0.000
ENSVPAG00000002726 Vicugna pacos ENSVPAG00000002726 I 0.000
RBMXL1 Vicugna pacos ENSVPAG00000005826 I 0.000