rbmx (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000014244 T36072_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMX
M344_0.6 		Homo sapiens CCM SELEX
Cook et al.(2011)
922_19282290 		0.831
RBMY1A1
M247_0.6 		Homo sapiens CWCAA SELEX
Cook et al.(2011)
1053_17318228 		0.718
RBMY1A1
M246_0.6 		Homo sapiens CWCAA SELEX
Cook et al.(2011)
1052_17318228 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000009865 RRM 10 80

Links

Other RRM family RBPs
Other Danio rerio RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMXL3 Gasterosteus aculeatus ENSGACG00000017237 I 0.859
RBMXL3 Oryzias latipes ENSORLG00000001692 I 0.859
RBMXL3 Takifugu rubripes ENSTRUG00000006031 I 0.845
RBMXL1 Myotis lucifugus ENSMLUG00000013209 I 0.831
RBMXL1 Tursiops truncatus ENSTTRG00000007322 I 0.831
RBMXL1 Microcebus murinus ENSMICG00000006856 I 0.831
Ame_R008043 Ailuropoda melanoleuca Ame_R008043 I 0.831
RBMXL1 Vicugna pacos ENSVPAG00000005826 I 0.831
Rbmx Rattus norvegicus ENSRNOG00000000866 I 0.831
Rbmx Mus musculus ENSMUSG00000031134 I 0.831
RBMXL1 Oryctolagus cuniculus ENSOCUG00000007220 I 0.831
ENSPPYG00000020771 Pongo pygmaeus ENSPPYG00000020771 I 0.831
RBMX Taeniopygia guttata ENSTGUG00000002135 I 0.831
RBMXL1 Sus scrofa ENSSSCG00000012703 I 0.831
RBMXL3 Tetraodon nigroviridis ENSTNIG00000016844 I 0.831
ENSOCUG00000028230 Oryctolagus cuniculus ENSOCUG00000028230 I 0.831
AAH70649 Xenopus laevis AAH70649 I 0.831
RBMX Oryctolagus cuniculus ENSOCUG00000024093 I 0.831
ENSOANG00000011670 Ornithorhynchus anatinus ENSOANG00000011670 I 0.831
RBMX Meleagris gallopavo ENSMGAG00000003594 I 0.831
RBMXL1 Dasypus novemcinctus ENSDNOG00000017199 I 0.831
RBMX Homo sapiens ENSG00000147274 D 0.831
RBMX Cavia porcellus ENSCPOG00000012164 I 0.831
ENSACAG00000009551 Anolis carolinensis ENSACAG00000009551 I 0.831
D3JUI8_BOVIN Bos taurus ENSBTAG00000013308 I 0.831
Q5ZKQ9_CHICK Gallus gallus ENSGALG00000006457 I 0.831
LOC100054583 Equus caballus ENSECAG00000021380 I 0.831
ENSLAFG00000005568 Loxodonta africana ENSLAFG00000005568 I 0.831
RBMXL1 Gorilla gorilla ENSGGOG00000027619 I 0.831
LOC100406653 Callithrix jacchus ENSCJAG00000003626 I 0.831
RBMXL1 Callithrix jacchus ENSCJAG00000032899 I 0.831
RBMXL1 Canis familiaris ENSCAFG00000018962 I 0.819
ENSMUSG00000049235 Mus musculus ENSMUSG00000049235 I 0.817
RBMX Tarsius syrichta ENSTSYG00000009555 I 0.817
Rbmxrt Mus musculus ENSMUSG00000037070 I 0.817
Rbmxrtl Rattus norvegicus ENSRNOG00000012138 I 0.803
D4AE41_RAT Rattus norvegicus ENSRNOG00000028858 I 0.803
RBMXL2 Pan troglodytes ENSPTRG00000003312 I 0.803
HNRPG_PANTR Pan troglodytes ENSPTRG00000000933 I 0.803
XR_023586.1 Pan troglodytes ENSPTRG00000004121 I 0.803
RBMXL1 Homo sapiens ENSG00000213516 I 0.803
ENSPPYG00000001177 Pongo pygmaeus ENSPPYG00000001177 I 0.803
RBMXL2 Homo sapiens ENSG00000170748 I 0.803
Q2VIN1_9PRIM Gorilla gorilla ENSGGOG00000012016 I 0.803
HNRPG_BOVIN Bos taurus ENSBTAG00000011807 I 0.789
LOC100415631 Callithrix jacchus ENSCJAG00000022240 I 0.789
HNRPG_BOVIN Bos taurus ENSBTAG00000036140 I 0.789
ENSPPYG00000019152 Pongo pygmaeus ENSPPYG00000019152 I 0.789
ENSLAFG00000022169 Loxodonta africana ENSLAFG00000022169 I 0.789
O97560_MACEU Macropus eugenii ENSMEUG00000013834 I 0.789
ENSOCUG00000021095 Oryctolagus cuniculus ENSOCUG00000021095 I 0.789
Rbmxl2 Mus musculus ENSMUSG00000073894 I 0.789
ENSMEUG00000015892 Macropus eugenii ENSMEUG00000015892 I 0.789
XM_001367159.1 Monodelphis domestica ENSMODG00000014054 I 0.789
Rbmxl2 Dipodomys ordii ENSDORG00000010267 I 0.775
RBMX Pan troglodytes ENSPTRG00000034071 I 0.775
ENSDNOG00000009042 Dasypus novemcinctus ENSDNOG00000009042 I 0.761
ENSCJAG00000013619 Callithrix jacchus ENSCJAG00000013619 I 0.761
D3ZT57_RAT Rattus norvegicus ENSRNOG00000021946 I 0.761
ENSTTRG00000003238 Tursiops truncatus ENSTTRG00000003238 I 0.761
ENSLAFG00000020807 Loxodonta africana ENSLAFG00000020807 I 0.746
ENSLAFG00000014037 Loxodonta africana ENSLAFG00000014037 I 0.746
ENSVPAG00000002726 Vicugna pacos ENSVPAG00000002726 I 0.746
ENSTBEG00000001154 Tupaia belangeri ENSTBEG00000001154 I 0.746
ENSCJAG00000016247 Callithrix jacchus ENSCJAG00000016247 I 0.732
RBMX Felis catus ENSFCAG00000004779 I 0.718
XR_020159.1 Pan troglodytes ENSPTRG00000032591 I 0.718
XR_019934.1 Pan troglodytes ENSPTRG00000032589 I 0.718
XR_020119.1 Pan troglodytes ENSPTRG00000028826 I 0.718
LOC750990 Pan troglodytes ENSPTRG00000028802 I 0.718
Q52NW1_PANTR Pan troglodytes ENSPTRG00000028822 I 0.718
ENSPTRG00000032590 Pan troglodytes ENSPTRG00000032590 I 0.718
RBMXL3 Homo sapiens ENSG00000175718 I 0.704
RBMY1B Homo sapiens ENSG00000242875 I 0.704
RBMY1D Homo sapiens ENSG00000244395 I 0.704
RBMY1E Homo sapiens ENSG00000242389 I 0.704
RBMY1A1 Homo sapiens ENSG00000234414 D 0.704