CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBMXL2
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000170748
T37316_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBMX
M344_0.6
Homo sapiens
CCM
SELEX
Cook et al.(2011)
922_19282290
0.944
RBMY1A1
M247_0.6
Homo sapiens
CWCAA
SELEX
Cook et al.(2011)
1053_17318228
0.775
RBMY1A1
M246_0.6
Homo sapiens
CWCAA
SELEX
Cook et al.(2011)
1052_17318228
0.775
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000304139
RRM
10
80
LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIK
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
83 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBMXL2
Pan troglodytes
ENSPTRG00000003312
I
1.000
LOC100415631
Callithrix jacchus
ENSCJAG00000022240
I
0.972
RBMX
Cavia porcellus
ENSCPOG00000012164
I
0.944
RBMXL1
Callithrix jacchus
ENSCJAG00000032899
I
0.944
ENSOCUG00000028230
Oryctolagus cuniculus
ENSOCUG00000028230
I
0.944
ENSOCUG00000021095
Oryctolagus cuniculus
ENSOCUG00000021095
I
0.944
Rbmx
Mus musculus
ENSMUSG00000031134
I
0.944
ENSOANG00000011670
Ornithorhynchus anatinus
ENSOANG00000011670
I
0.944
RBMXL1
Oryctolagus cuniculus
ENSOCUG00000007220
I
0.944
RBMX
Oryctolagus cuniculus
ENSOCUG00000024093
I
0.944
Rbmx
Rattus norvegicus
ENSRNOG00000000866
I
0.944
ENSACAG00000009551
Anolis carolinensis
ENSACAG00000009551
I
0.944
D3JUI8_BOVIN
Bos taurus
ENSBTAG00000013308
I
0.944
LOC100406653
Callithrix jacchus
ENSCJAG00000003626
I
0.944
Ame_R008043
Ailuropoda melanoleuca
Ame_R008043
I
0.944
RBMXL1
Vicugna pacos
ENSVPAG00000005826
I
0.944
RBMXL1
Sus scrofa
ENSSSCG00000012703
I
0.944
RBMX
Taeniopygia guttata
ENSTGUG00000002135
I
0.944
RBMXL1
Tursiops truncatus
ENSTTRG00000007322
I
0.944
RBMXL1
Myotis lucifugus
ENSMLUG00000013209
I
0.944
ENSPPYG00000020771
Pongo pygmaeus
ENSPPYG00000020771
I
0.944
LOC100054583
Equus caballus
ENSECAG00000021380
I
0.944
RBMXL1
Gorilla gorilla
ENSGGOG00000027619
I
0.944
Q5ZKQ9_CHICK
Gallus gallus
ENSGALG00000006457
I
0.944
RBMXL1
Dasypus novemcinctus
ENSDNOG00000017199
I
0.944
RBMX
Homo sapiens
ENSG00000147274
D
0.944
ENSLAFG00000005568
Loxodonta africana
ENSLAFG00000005568
I
0.944
RBMX
Meleagris gallopavo
ENSMGAG00000003594
I
0.944
RBMXL1
Microcebus murinus
ENSMICG00000006856
I
0.944
RBMXL1
Canis familiaris
ENSCAFG00000018962
I
0.931
HNRPG_BOVIN
Bos taurus
ENSBTAG00000011807
I
0.930
ENSMUSG00000049235
Mus musculus
ENSMUSG00000049235
I
0.930
Rbmxrt
Mus musculus
ENSMUSG00000037070
I
0.930
HNRPG_BOVIN
Bos taurus
ENSBTAG00000036140
I
0.930
RBMX
Tarsius syrichta
ENSTSYG00000009555
I
0.930
Rbmxl2
Mus musculus
ENSMUSG00000073894
I
0.915
Rbmxrtl
Rattus norvegicus
ENSRNOG00000012138
I
0.915
RBMXL1
Homo sapiens
ENSG00000213516
I
0.915
Q2VIN1_9PRIM
Gorilla gorilla
ENSGGOG00000012016
I
0.915
ENSPPYG00000001177
Pongo pygmaeus
ENSPPYG00000001177
I
0.915
HNRPG_PANTR
Pan troglodytes
ENSPTRG00000000933
I
0.915
D4AE41_RAT
Rattus norvegicus
ENSRNOG00000028858
I
0.915
Rbmxl2
Dipodomys ordii
ENSDORG00000010267
I
0.915
ENSLAFG00000022169
Loxodonta africana
ENSLAFG00000022169
I
0.901
ENSLAFG00000014037
Loxodonta africana
ENSLAFG00000014037
I
0.901
XR_023586.1
Pan troglodytes
ENSPTRG00000004121
I
0.901
ENSTTRG00000003238
Tursiops truncatus
ENSTTRG00000003238
I
0.901
ENSPPYG00000019152
Pongo pygmaeus
ENSPPYG00000019152
I
0.901
RBMX
Pan troglodytes
ENSPTRG00000034071
I
0.887
D3ZT57_RAT
Rattus norvegicus
ENSRNOG00000021946
I
0.887
RBMXL3
Gasterosteus aculeatus
ENSGACG00000017237
I
0.873
RBMXL3
Homo sapiens
ENSG00000175718
I
0.873
O97560_MACEU
Macropus eugenii
ENSMEUG00000013834
I
0.873
RBMXL3
Oryzias latipes
ENSORLG00000001692
I
0.873
ENSMEUG00000015892
Macropus eugenii
ENSMEUG00000015892
I
0.873
XM_001367159.1
Monodelphis domestica
ENSMODG00000014054
I
0.873
RBMXL3
Gorilla gorilla
ENSGGOG00000027260
I
0.859
RBMXL3
Takifugu rubripes
ENSTRUG00000006031
I
0.859
AAH70649
Xenopus laevis
AAH70649
I
0.859
ENSCJAG00000013619
Callithrix jacchus
ENSCJAG00000013619
I
0.845
ENSCJAG00000016247
Callithrix jacchus
ENSCJAG00000016247
I
0.845
ENSDNOG00000009042
Dasypus novemcinctus
ENSDNOG00000009042
I
0.845
RBMXL3
Tetraodon nigroviridis
ENSTNIG00000016844
I
0.845
ENSLAFG00000020807
Loxodonta africana
ENSLAFG00000020807
I
0.831
ENSTBEG00000001154
Tupaia belangeri
ENSTBEG00000001154
I
0.831
RBMX
Felis catus
ENSFCAG00000004779
I
0.831
ENSVPAG00000002726
Vicugna pacos
ENSVPAG00000002726
I
0.831
rbmx
Danio rerio
ENSDARG00000014244
I
0.803
RBMXL3
Callithrix jacchus
ENSCJAG00000006948
I
0.775
XR_020119.1
Pan troglodytes
ENSPTRG00000028826
I
0.775
Q52NW1_PANTR
Pan troglodytes
ENSPTRG00000028822
I
0.775
XR_019934.1
Pan troglodytes
ENSPTRG00000032589
I
0.775
LOC750990
Pan troglodytes
ENSPTRG00000028802
I
0.775
ENSPTRG00000032590
Pan troglodytes
ENSPTRG00000032590
I
0.775
XR_020159.1
Pan troglodytes
ENSPTRG00000032591
I
0.775
RBMY1E
Homo sapiens
ENSG00000242389
I
0.761
RBMY1A1
Homo sapiens
ENSG00000234414
D
0.761
RBMY1B
Homo sapiens
ENSG00000242875
I
0.761
RBMY1D
Homo sapiens
ENSG00000244395
I
0.761
Ame_R020019
Ailuropoda melanoleuca
Ame_R020019
I
0.761
ENSPTRG00000028821
Pan troglodytes
ENSPTRG00000028821
I
0.761
RBMY1F
Homo sapiens
ENSG00000169800
I
0.746
RBMY1J
Homo sapiens
ENSG00000226941
I
0.746