PDK_20s1490591g003 (Phoenix dactylifera)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		PDK_20s1490591g003 T01119_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1490591g003 CCCH ZF 13 38
PDK_20s1490591g003 RRM 82 140
PDK_20s1490591g003 CCCH ZF 149 174

Links

Other CCCH ZF,RRM family RBPs
Other Phoenix dactylifera RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa025949m Prunus persica ppa025949m N 0.830
mgf010816m Mimulus guttatus mgf010816m N 0.830
mgf004170m Mimulus guttatus mgf004170m N 0.795
mgf003009m Mimulus guttatus mgf003009m N 0.795
mgf001805m Mimulus guttatus mgf001805m N 0.902
mgf001260m Mimulus guttatus mgf001260m N 0.795
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.750
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.884
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.802
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.830
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.839
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.893
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.830
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.875
fgenesh1_pm.C_Chr_15000025 Ostreococcus lucimarinus fgenesh1_pm.C_Chr_15000025 N 0.730
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.884
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.795
s_458600 Phytophthora sojae s_458600 N 0.732
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.938
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.938
ppa008459m Prunus persica ppa008459m N 0.839
MDP0000640144 Malus x domestica MDP0000640144 N 0.830
MDP0000321343 Malus x domestica MDP0000321343 N 0.929
MDP0000284705 Malus x domestica MDP0000284705 N 0.839
MDP0000179037 Malus x domestica MDP0000179037 N 0.839
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.839
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.777
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.777
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.723
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.795
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.804
1600010121 Ostreococcus tauri 1600010121 N 0.707
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.768
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.902
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.848
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.938
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.804
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.750
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.920
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.797
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.831
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.893
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.929
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.857
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.902
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.893
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.812
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.875
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.884
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.929
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.893
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.929
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.902
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.893
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.848
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.920
SB03G030670 Sorghum bicolor Sb03g030670 N 0.920
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.724
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.920
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.774
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.839
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.804
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.821
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.821
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.821
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.938
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.848
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.830
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.830
30170.m013808 Ricinus communis 30170.m013808 N 0.938
29991.m000639 Ricinus communis 29991.m000639 N 0.752
29092.m000448 Ricinus communis 29092.m000448 N 0.830
SB09G028530 Sorghum bicolor Sb09g028530 N 0.938
PITG_05688 Phytophthora infestans PITG_05688 N 0.723