MBNL3_FUGRU (Takifugu rubripes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSTRUG00000012666 T03540_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.849
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.849
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000032077 CCCH ZF 16 40
ENSTRUP00000032077 CCCH ZF 57 72
ENSTRUP00000032077 CCCH ZF 178 204
ENSTRUP00000032077 CCCH ZF 216 238
ENSTRUP00000032078 CCCH ZF 19 43
ENSTRUP00000032078 CCCH ZF 60 75
ENSTRUP00000032078 CCCH ZF 181 207
ENSTRUP00000032078 CCCH ZF 219 241
ENSTRUP00000032079 CCCH ZF 16 40
ENSTRUP00000032079 CCCH ZF 57 72
ENSTRUP00000032079 CCCH ZF 178 204
ENSTRUP00000032079 CCCH ZF 216 238
ENSTRUP00000032080 CCCH ZF 16 40
ENSTRUP00000032080 CCCH ZF 57 72
ENSTRUP00000032080 CCCH ZF 178 204
ENSTRUP00000032080 CCCH ZF 216 238
ENSTRUP00000032081 CCCH ZF 19 43
ENSTRUP00000032081 CCCH ZF 60 75
ENSTRUP00000032081 CCCH ZF 181 207
ENSTRUP00000032081 CCCH ZF 219 241

Links

Other CCCH ZF family RBPs
Other Takifugu rubripes RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Genemark.10526_g Serpula lacrymans Genemark.10526_g N 0.000
Genemark.6548_g Serpula lacrymans Genemark.6548_g N 0.000
Genemark.6054_g Serpula lacrymans Genemark.6054_g N 0.000
Genemark.4804_g Serpula lacrymans Genemark.4804_g N 0.000
Genemark.3124_g Serpula lacrymans Genemark.3124_g N 0.000
Genemark.3014_g Serpula lacrymans Genemark.3014_g N 0.000
Genemark.12199_g Serpula lacrymans Genemark.12199_g N 0.000
Genemark.12031_g Serpula lacrymans Genemark.12031_g N 0.000
Genemark.11813_g Serpula lacrymans Genemark.11813_g N 0.000
Genemark.11725_g Serpula lacrymans Genemark.11725_g N 0.000
Genemark.10975_g Serpula lacrymans Genemark.10975_g N 0.000
Genemark.940_g Serpula lacrymans Genemark.940_g N 0.000