LIN28A (Oryzias latipes)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSORLG00000014369 T06820_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.882
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.882
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000018011 CSD 32 105
ENSORLP00000018011 CCHC ZF 131 148
ENSORLP00000018011 CCHC ZF 153 170
ENSORLP00000018015 CSD 31 104
ENSORLP00000018015 CCHC ZF 126 143
ENSORLP00000018015 CCHC ZF 148 165

Links

Other CCHC ZF,CSD family RBPs
Other Oryzias latipes RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LIN28A Homo sapiens ENSG00000131914 D 0.882
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.827
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.882
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.882
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.845
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.836
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.873
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.836
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.882
LIN28A Procavia capensis ENSPCAG00000013674 I 0.827
LIN28B Oryzias latipes ENSORLG00000012891 I 0.800
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.845
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.882
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.809
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.855
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.882
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.882
Q8JHC4 Xenopus laevis Q8JHC4 I 0.827
LIN28B Sorex araneus ENSSARG00000008374 I 0.836
Q8AVK2 Xenopus laevis Q8AVK2 I 0.800
AAM77750 Xenopus laevis AAM77750 I 0.827
AAI69625 Xenopus laevis AAI69625 I 0.827
AAI69597 Xenopus laevis AAI69597 I 0.827
AAH42225 Xenopus laevis AAH42225 I 0.800
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.845
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.882
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.855
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.882
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.845
LIN28A Takifugu rubripes ENSTRUG00000009454 I 0.773
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.818
LIN28A Takifugu rubripes ENSTRUG00000006069 I 0.927
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.800
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.745
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.836
LIN28A Sus scrofa ENSSSCG00000003557 I 0.873
Lin28b Mus musculus ENSMUSG00000063804 I 0.836
Lin28a Mus musculus ENSMUSG00000050966 I 0.882
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.845
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.855
LOC100066260 Equus caballus ENSECAG00000020994 I 0.845
LIN28 Equus caballus ENSECAG00000020267 I 0.882
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.836
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.882
lin28a Danio rerio ENSDARG00000016999 I 0.845
LIN28A Danio rerio ENSDARG00000004328 I 0.855
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.873
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.836
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.800
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.882
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.845
LIN28A Canis familiaris ENSCAFG00000012488 I 0.882
LIN28B Canis familiaris ENSCAFG00000003598 I 0.855
LIN28A Bos taurus ENSBTAG00000040497 I 0.882
LIN28B Echinops telfairi ENSETEG00000015340 I 0.836
LIN28A Felis catus ENSFCAG00000012810 I 0.882
LIN28B Homo sapiens ENSG00000187772 I 0.836
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.845
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.882
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.882
LIN28B Microcebus murinus ENSMICG00000002297 I 0.845
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.836
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.873
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.882
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.845
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.882
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.882
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.836
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.827
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.873
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.918
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.818
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.800
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.855