LIN28A (Takifugu rubripes)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSTRUG00000009454 T06841_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.773
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000023757 CSD 30 103
ENSTRUP00000023757 CCHC ZF 126 142
ENSTRUP00000023757 CCHC ZF 148 165
ENSTRUP00000023758 CSD 35 108
ENSTRUP00000023758 CCHC ZF 131 147
ENSTRUP00000023758 CCHC ZF 153 170

Links

Other CCHC ZF,CSD family RBPs
Other Takifugu rubripes RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.890
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.835
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.773
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.773
LIN28A Homo sapiens ENSG00000131914 D 0.773
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.773
LIN28 Equus caballus ENSECAG00000020267 I 0.773
LIN28A Felis catus ENSFCAG00000012810 I 0.773
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.773
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.773
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.773
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.773
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.773
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.773
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.773
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.773
LIN28A Oryzias latipes ENSORLG00000014369 I 0.773
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.773
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.773
LIN28A Canis familiaris ENSCAFG00000012488 I 0.773
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.773
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.773
LIN28B Sorex araneus ENSSARG00000008374 I 0.771
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.771
LIN28A Sus scrofa ENSSSCG00000003557 I 0.764
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.764
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.764
Lin28a Mus musculus ENSMUSG00000050966 I 0.764
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.764
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.764
LIN28A Takifugu rubripes ENSTRUG00000006069 I 0.764
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.764
LIN28A Bos taurus ENSBTAG00000040497 I 0.764
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.761
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.761
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.761
LIN28B Homo sapiens ENSG00000187772 I 0.761
LOC100066260 Equus caballus ENSECAG00000020994 I 0.761
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.761
LIN28B Echinops telfairi ENSETEG00000015340 I 0.761
lin28a Danio rerio ENSDARG00000016999 I 0.761
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.761
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.761
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.761
Lin28b Mus musculus ENSMUSG00000063804 I 0.761
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.755
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.752
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.752
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.752
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.752
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.752
LIN28B Canis familiaris ENSCAFG00000003598 I 0.752
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.752
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.752
LIN28B Microcebus murinus ENSMICG00000002297 I 0.752
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.752
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.752
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.752
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.745
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.743
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.736
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.736
LIN28A Danio rerio ENSDARG00000004328 I 0.736
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.734
AAH42225 Xenopus laevis AAH42225 I 0.725
LIN28B Oryzias latipes ENSORLG00000012891 I 0.725
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.725
Q8AVK2 Xenopus laevis Q8AVK2 I 0.725
AAI69597 Xenopus laevis AAI69597 I 0.718
Q8JHC4 Xenopus laevis Q8JHC4 I 0.718
LIN28A Procavia capensis ENSPCAG00000013674 I 0.718
AAM77750 Xenopus laevis AAM77750 I 0.718
AAI69625 Xenopus laevis AAI69625 I 0.718
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.709