LIN28B (Monodelphis domestica)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSMODG00000018035 T06808_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.809
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000022487 CSD 29 102
ENSMODP00000022487 CCHC ZF 127 143
ENSMODP00000029643 CSD 29 102
ENSMODP00000029643 CCHC ZF 145 161
ENSMODP00000029643 CCHC ZF 167 184
ENSMODP00000029644 CSD 42 82

Links

Other CCHC ZF,CSD family RBPs
Other Monodelphis domestica RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LIN28B Tursiops truncatus ENSTTRG00000014919 N 0.989
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 N 0.989
LIN28B Macaca mulatta ENSMMUG00000014470 N 0.978
LIN28B Bos taurus ENSBTAG00000043973 N 0.978
LIN28B Sus scrofa ENSSSCG00000004365 N 0.978
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.972
LIN28B Canis familiaris ENSCAFG00000003598 I 0.963
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.963
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.963
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.963
LIN28B Microcebus murinus ENSMICG00000002297 I 0.963
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.963
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.963
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.963
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.963
LIN28B Homo sapiens ENSG00000187772 I 0.963
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.954
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.954
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.954
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 N 0.945
LIN28B Sorex araneus ENSSARG00000008374 I 0.945
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.945
LOC100066260 Equus caballus ENSECAG00000020994 I 0.945
Lin28b Mus musculus ENSMUSG00000063804 I 0.945
LIN28B Echinops telfairi ENSETEG00000015340 I 0.945
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.936
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.927
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.927
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.917
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.917
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.917
Q8AVK2 Xenopus laevis Q8AVK2 I 0.881
AAH42225 Xenopus laevis AAH42225 I 0.881
LIN28A Oryzias latipes ENSORLG00000014369 I 0.845
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.844
LIN28A Takifugu rubripes ENSTRUG00000006069 I 0.836
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.835
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.827
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.827
LIN28B Oryzias latipes ENSORLG00000012891 I 0.826
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.826
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.818
LIN28B Vicugna pacos ENSVPAG00000011202 N 0.813
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.809
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.809
LIN28A Felis catus ENSFCAG00000012810 I 0.809
LIN28A Homo sapiens ENSG00000131914 D 0.809
LIN28 Equus caballus ENSECAG00000020267 I 0.809
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.809
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.809
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.809
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.809
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.809
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.809
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.809
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.809
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.809
Lin28a Mus musculus ENSMUSG00000050966 I 0.809
LIN28A Bos taurus ENSBTAG00000040497 I 0.809
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.809
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.809
LIN28A Canis familiaris ENSCAFG00000012488 I 0.809
LIN28A Sus scrofa ENSSSCG00000003557 I 0.809
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.809
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.809
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.800
LIN28A Danio rerio ENSDARG00000004328 I 0.800
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.800
lin28a Danio rerio ENSDARG00000016999 I 0.798
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.791
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.782
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.773
LIN28A Procavia capensis ENSPCAG00000013674 I 0.764
LOC100388273 Callithrix jacchus ENSCJAG00000016916 N 0.763
LIN28A Takifugu rubripes ENSTRUG00000009454 I 0.761
AAM77750 Xenopus laevis AAM77750 I 0.755
AAI69597 Xenopus laevis AAI69597 I 0.755
AAI69625 Xenopus laevis AAI69625 I 0.755
Q8JHC4 Xenopus laevis Q8JHC4 I 0.755
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.755
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.752
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.725