CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LIN28B
(
Meleagris gallopavo
)
CCHC ZF,CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD)
IPR001878
IPR002059
ENSMGAG00000013531
T06802_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
LIN28A
M153_0.6
Homo sapiens
YGGAGGR
RNAcompete
Ray et al.(2013)
RNCMPT00162
0.817
LIN28A
M035_0.6
Homo sapiens
HGGAGWA
RNAcompete
Ray et al.(2013)
RNCMPT00036
0.817
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000014302
CSD
28
100
GAGHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTYKKSSKGLESIRVTGP
ENSMGAP00000014302
CCHC ZF
125
141
SRCYNCGGLDHHAKECS
ENSMGAP00000014302
CCHC ZF
147
164
KKCHYCQSIMHMVANCPH
Links
Other
CCHC ZF,CSD
family RBPs
Other
Meleagris gallopavo
RBPs
74 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LN28B_CHICK
Gallus gallus
ENSGALG00000015411
I
0.991
LIN28B
Taeniopygia guttata
ENSTGUG00000012225
I
0.954
LIN28B
Tarsius syrichta
ENSTSYG00000006480
I
0.927
LIN28B
Anolis carolinensis
ENSACAG00000003957
I
0.918
ENSPPYG00000016875
Pongo pygmaeus
ENSPPYG00000016875
I
0.917
LOC100400137
Callithrix jacchus
ENSCJAG00000001671
I
0.917
LIN28B
Canis familiaris
ENSCAFG00000003598
I
0.917
LIN28B
Homo sapiens
ENSG00000187772
I
0.917
LIN28B
Gorilla gorilla
ENSGGOG00000015437
I
0.917
LIN28B
Monodelphis domestica
ENSMODG00000018035
I
0.917
LIN28B
Pan troglodytes
ENSPTRG00000018453
I
0.917
Ame_R004947
Ailuropoda melanoleuca
Ame_R004947
I
0.908
LIN28B
Pteropus vampyrus
ENSPVAG00000008797
I
0.908
LIN28B
Microcebus murinus
ENSMICG00000002297
I
0.908
LOC100066260
Equus caballus
ENSECAG00000020994
I
0.908
LIN28B
Loxodonta africana
ENSLAFG00000017788
I
0.908
Lin28b
Mus musculus
ENSMUSG00000063804
I
0.908
LIN28B
Echinops telfairi
ENSETEG00000015340
I
0.908
LIN28B
Erinaceus europaeus
ENSEEUG00000003632
I
0.908
Q8AVK2
Xenopus laevis
Q8AVK2
I
0.907
AAH42225
Xenopus laevis
AAH42225
I
0.907
LIN28B
Sorex araneus
ENSSARG00000008374
I
0.899
LIN28B
Ochotona princeps
ENSOPRG00000006333
I
0.899
Lin28b
Rattus norvegicus
ENSRNOG00000025938
I
0.899
LIN28B
Cavia porcellus
ENSCPOG00000006178
I
0.890
LIN28B
Dasypus novemcinctus
ENSDNOG00000015300
I
0.890
LIN28B
Otolemur garnettii
ENSOGAG00000011042
I
0.862
LIN28B
Oryzias latipes
ENSORLG00000012891
I
0.852
LIN28B
Takifugu rubripes
ENSTRUG00000008428
I
0.852
LIN28B
Gasterosteus aculeatus
ENSGACG00000009428
I
0.852
LIN28A
Oryzias latipes
ENSORLG00000014369
I
0.836
LIN28B
Tetraodon nigroviridis
ENSTNIG00000012302
I
0.833
LIN28A
Gasterosteus aculeatus
ENSGACG00000013893
I
0.827
LIN28A
Takifugu rubripes
ENSTRUG00000006069
I
0.826
LN28A_CHICK
Gallus gallus
ENSGALG00000000388
I
0.818
LIN28A
Meleagris gallopavo
ENSMGAG00000009456
I
0.818
LIN28A
Macropus eugenii
ENSMEUG00000008743
I
0.817
LIN28A
Myotis lucifugus
ENSMLUG00000010158
I
0.817
LIN28
Equus caballus
ENSECAG00000020267
I
0.817
LIN28A
Loxodonta africana
ENSLAFG00000017525
I
0.817
LIN28A
Dasypus novemcinctus
ENSDNOG00000010710
I
0.817
LIN28A
Danio rerio
ENSDARG00000004328
I
0.817
ENSOCUG00000027473
Oryctolagus cuniculus
ENSOCUG00000027473
I
0.817
ENSOCUG00000000299
Oryctolagus cuniculus
ENSOCUG00000000299
I
0.817
LIN28A
Monodelphis domestica
ENSMODG00000014236
I
0.817
LIN28A
Homo sapiens
ENSG00000131914
D
0.817
LIN28A
Felis catus
ENSFCAG00000012810
I
0.817
LIN28A
Gorilla gorilla
ENSGGOG00000024918
I
0.817
Lin28a
Mus musculus
ENSMUSG00000050966
I
0.817
LOC100405014
Callithrix jacchus
ENSCJAG00000009796
I
0.817
LIN28A
Bos taurus
ENSBTAG00000040497
I
0.817
ENSPPYG00000001684
Pongo pygmaeus
ENSPPYG00000001684
I
0.817
LIN28A
Pteropus vampyrus
ENSPVAG00000017267
I
0.817
LIN28A
Tursiops truncatus
ENSTTRG00000005678
I
0.817
LIN28A
Canis familiaris
ENSCAFG00000012488
I
0.817
LIN28A
Sus scrofa
ENSSSCG00000003557
I
0.817
LIN28A
Ochotona princeps
ENSOPRG00000001591
I
0.817
Ame_R001082
Ailuropoda melanoleuca
Ame_R001082
I
0.817
Lin28
Rattus norvegicus
ENSRNOG00000015384
I
0.817
XR_023903.1
Pan troglodytes
ENSPTRG00000000384
I
0.807
ENSCPOG00000024027
Cavia porcellus
ENSCPOG00000024027
I
0.807
lin28a
Xenopus tropicalis
ENSXETG00000012324
I
0.791
ENSOCUG00000027786
Oryctolagus cuniculus
ENSOCUG00000027786
I
0.789
lin28a
Danio rerio
ENSDARG00000016999
I
0.789
LIN28A
Gasterosteus aculeatus
ENSGACG00000007826
I
0.780
LIN28A
Erinaceus europaeus
ENSEEUG00000012085
I
0.771
LIN28A
Procavia capensis
ENSPCAG00000013674
I
0.771
AAI69625
Xenopus laevis
AAI69625
I
0.764
AAI69597
Xenopus laevis
AAI69597
I
0.764
AAM77750
Xenopus laevis
AAM77750
I
0.764
Q8JHC4
Xenopus laevis
Q8JHC4
I
0.764
LIN28A
Takifugu rubripes
ENSTRUG00000009454
I
0.752
LOC100406610
Callithrix jacchus
ENSCJAG00000021979
I
0.745
LIN28A
Tetraodon nigroviridis
ENSTNIG00000009802
I
0.734