CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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13114.t00078
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
13114.t00078
T09263_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
13114.m00166
CCHC ZF
297
314
GPCFNCGKHGHFAGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
226 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH68817
Xenopus laevis
AAH68817
N
0.000
ZCCHC9
Pan troglodytes
ENSPTRG00000017047
N
0.000
ENSPPYG00000015604
Pongo pygmaeus
ENSPPYG00000015604
N
0.000
ZCCHC9
Oryzias latipes
ENSORLG00000020135
N
0.000
ZCCHC9
Ochotona princeps
ENSOPRG00000004474
N
0.000
ZCCHC9
Otolemur garnettii
ENSOGAG00000002543
N
0.000
ZCCHC9
Oryctolagus cuniculus
ENSOCUG00000011215
N
0.000
ZCCHC9
Ornithorhynchus anatinus
ENSOANG00000014769
N
0.000
Zcchc9
Mus musculus
ENSMUSG00000021621
N
0.000
XM_001363259.1
Monodelphis domestica
ENSMODG00000020261
N
0.000
Zcchc9
Rattus norvegicus
ENSRNOG00000014927
N
0.000
ZCCHC9
Sorex araneus
ENSSARG00000008580
N
0.000
Ame_R004078
Ailuropoda melanoleuca
Ame_R004078
N
0.000
zcchc9
Xenopus tropicalis
ENSXETG00000027804
N
0.000
ZCCHC9
Vicugna pacos
ENSVPAG00000009423
N
0.000
ZCCHC9
Tursiops truncatus
ENSTTRG00000013796
N
0.000
ZCCHC9
Tarsius syrichta
ENSTSYG00000012423
N
0.000
ZCCHC9
Takifugu rubripes
ENSTRUG00000018600
N
0.000
ZCCHC9
Tetraodon nigroviridis
ENSTNIG00000013571
N
0.000
ZCCHC9
Taeniopygia guttata
ENSTGUG00000006994
N
0.000
ZCCHC9
Sus scrofa
ENSSSCG00000014129
N
0.000
Q3YAK8_MACMU
Macaca mulatta
ENSMMUG00000020655
N
0.000
ZCCHC9
Myotis lucifugus
ENSMLUG00000001886
N
0.000
ZCCHC9
Microcebus murinus
ENSMICG00000016266
N
0.000
zcchc9
Danio rerio
ENSDARG00000007531
N
0.000
ENSCSAVG00000010478
Ciona savignyi
ENSCSAVG00000010478
N
0.000
ZCCHC9
Cavia porcellus
ENSCPOG00000003947
N
0.000
LOC100395171
Callithrix jacchus
ENSCJAG00000019486
N
0.000
ENSCING00000008173
Ciona intestinalis
ENSCING00000008173
N
0.000
ZCCHC9
Choloepus hoffmanni
ENSCHOG00000005268
N
0.000
XM_847464.1
Canis familiaris
ENSCAFG00000023419
N
0.000
XM_854231.1
Canis familiaris
ENSCAFG00000008703
N
0.000
A6H756_BOVIN
Bos taurus
ENSBTAG00000005265
N
0.000
ZCCHC9
Dasypus novemcinctus
ENSDNOG00000016708
N
0.000
Zcchc9
Dipodomys ordii
ENSDORG00000001300
N
0.000
ZCCHC9
Meleagris gallopavo
ENSMGAG00000006841
N
0.000
ZCCHC9
Macropus eugenii
ENSMEUG00000011005
N
0.000
ZCCHC9
Loxodonta africana
ENSLAFG00000012763
N
0.000
ZCCHC9
Gorilla gorilla
ENSGGOG00000013790
N
0.000
ZCCHC9
Gallus gallus
ENSGALG00000015603
N
0.000
ZCCHC9
Gasterosteus aculeatus
ENSGACG00000015540
N
0.000
ZCCHC9
Homo sapiens
ENSG00000131732
N
0.000
ZCCHC9
Erinaceus europaeus
ENSEEUG00000010726
N
0.000
LOC100073252
Equus caballus
ENSECAG00000023186
N
0.000
ZCCHC9
Anolis carolinensis
ENSACAG00000010965
N
0.000