CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os04g09480
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os04g09480
T11172_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os04g09480.1
CCHC ZF
335
352
GSCFNCGELGHFANKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
486 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gm1.300904
Emiliania huxleyi
gm1.300904
N
0.000
PTTG_10751
Puccinia triticina
PTTG_10751
N
0.000
PTTG_10713
Puccinia triticina
PTTG_10713
N
0.000
PTTG_10552
Puccinia triticina
PTTG_10552
N
0.000
PTTG_10451
Puccinia triticina
PTTG_10451
N
0.000
PTTG_10344
Puccinia triticina
PTTG_10344
N
0.000
PTTG_10004
Puccinia triticina
PTTG_10004
N
0.000
PTTG_09789
Puccinia triticina
PTTG_09789
N
0.000
PTTG_09697
Puccinia triticina
PTTG_09697
N
0.000
PTTG_09362
Puccinia triticina
PTTG_09362
N
0.000
PTTG_10809
Puccinia triticina
PTTG_10809
N
0.000
PTTG_10862
Puccinia triticina
PTTG_10862
N
0.000
ENSGACG00000020110
Gasterosteus aculeatus
ENSGACG00000020110
N
0.000
ENSGACG00000013495
Gasterosteus aculeatus
ENSGACG00000013495
N
0.000
ENSGACG00000001944
Gasterosteus aculeatus
ENSGACG00000001944
N
0.000
PTTG_11563
Puccinia triticina
PTTG_11563
N
0.000
PTTG_11299
Puccinia triticina
PTTG_11299
N
0.000
PTTG_11278
Puccinia triticina
PTTG_11278
N
0.000
PTTG_11204
Puccinia triticina
PTTG_11204
N
0.000
PTTG_11068
Puccinia triticina
PTTG_11068
N
0.000
PTTG_11057
Puccinia triticina
PTTG_11057
N
0.000
PTTG_09070
Puccinia triticina
PTTG_09070
N
0.000
PTTG_09062
Puccinia triticina
PTTG_09062
N
0.000
PTTG_08980
Puccinia triticina
PTTG_08980
N
0.000
PTTG_05387
Puccinia triticina
PTTG_05387
N
0.000
PTTG_05310
Puccinia triticina
PTTG_05310
N
0.000
PTTG_05279
Puccinia triticina
PTTG_05279
N
0.000
PTTG_05127
Puccinia triticina
PTTG_05127
N
0.000
PTTG_04681
Puccinia triticina
PTTG_04681
N
0.000
PTTG_04497
Puccinia triticina
PTTG_04497
N
0.000
PTTG_03874
Puccinia triticina
PTTG_03874
N
0.000
PTTG_03611
Puccinia triticina
PTTG_03611
N
0.000
PTTG_03581
Puccinia triticina
PTTG_03581
N
0.000
PTTG_06000
Puccinia triticina
PTTG_06000
N
0.000
PTTG_06629
Puccinia triticina
PTTG_06629
N
0.000
PTTG_08777
Puccinia triticina
PTTG_08777
N
0.000
PTTG_08665
Puccinia triticina
PTTG_08665
N
0.000
PTTG_08342
Puccinia triticina
PTTG_08342
N
0.000
PTTG_08330
Puccinia triticina
PTTG_08330
N
0.000
PTTG_08329
Puccinia triticina
PTTG_08329
N
0.000
PTTG_07469
Puccinia triticina
PTTG_07469
N
0.000
PTTG_07232
Puccinia triticina
PTTG_07232
N
0.000
PTTG_06885
Puccinia triticina
PTTG_06885
N
0.000
PTTG_06752
Puccinia triticina
PTTG_06752
N
0.000
PTTG_01306
Puccinia triticina
PTTG_01306
N
0.000