CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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genemark.2333_g
(
Pleurotus ostreatus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
genemark.2333_g
T15708_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
genemark.2333_g
CCHC ZF
121
138
QLCYRCGKPGHMSRECPL
Links
Other
CCHC ZF
family RBPs
Other
Pleurotus ostreatus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_09648
Botrytis cinerea
BC1G_09648
N
0.000
AO090003000544
Aspergillus oryzae
CADAORAG00001164
N
0.000
NCU07069
Neurospora crassa
NCU07069
N
0.000
e_gw1.18.2147.1
Nectria haematococca
e_gw1.18.2147.1
N
0.000
e_gw1.5.1788.1
Thielavia terrestris
e_gw1.5.1788.1
N
0.000
estExt_fgenesh1_pm.C_chr_20271
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_20271
N
0.000
estExt_fgenesh2_kg.C_20245
Neurospora tetrasperma
estExt_fgenesh2_kg.C_20245
N
0.000
estExt_fgenesh3_kg.C_60024
Neurospora discreta
estExt_fgenesh3_kg.C_60024
N
0.000
estExt_fgenesh5_pg.C_160051
Trichoderma reesei
estExt_fgenesh5_pg.C_160051
N
0.000
estExt_Genewise1.C_21744
Trichoderma virens
estExt_Genewise1.C_21744
N
0.000
estExt_Genewise1Plus.C_51423
Myceliophthora thermophila
estExt_Genewise1Plus.C_51423
N
0.000
estExt_Genewise1Plus.C_80545
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_80545
N
0.000
fgenesh2_kg.10__63__CBWT_CBYP_CBYT_CCAH_1370_0_CBYT4195.b1
Trichoderma atroviride
fgenesh2_kg.10__63__CBWT_CBYP_CBYT_CCAH_1370_0_CBYT4195.b1
N
0.000
AB02127.1
Alternaria brassicicola
AB02127.1
N
0.000
estExt_Genewise1.C_90037
Cryphonectria parasitica
estExt_Genewise1.C_90037
N
0.000
fgenesh1_pm.00168_#_248
Aspergillus carbonarius
fgenesh1_pm.00168_#_248
N
0.000
ANIA_04978
Aspergillus nidulans
CADANIAG00005417
N
0.000
An16g03890
Aspergillus niger
CADANGAG00012860
N
0.000
CHGG_09128
Chaetomium globosum
CHGG_09128
N
0.000
CIMG_03560
Coccidioides immitis
CIMG_03560
N
0.000
CPSG_02395
Coccidioides posadasii
CPSG_02395
N
0.000
FOXG_05959
Fusarium oxysporum
FOXG_05959
N
0.000
FVEG_03827
Fusarium verticillioides
FVEG_03827
N
0.000
GLRG_08760
Colletotrichum graminicola
GLRG_08760
N
0.000
HCAG_00086
Histoplasma capsulatum
HCAG_00086
N
0.000
PTRG_11856
Pyrenophora tritici repentis
PTRG_11856
N
0.000
SS1G_14437
Sclerotinia sclerotiorum
SS1G_14437
N
0.000
TEQG_05050
Trichophyton equinum
TEQG_05050
N
0.000
TESG_02526
Trichophyton tonsurans
TESG_02526
N
0.000
VDAG_10099
Verticillium dahliae
VDAG_10099
N
0.000
ACLA_037960
Aspergillus clavatus
CADACLAG00003195
N
0.000
AFLA_032760
Aspergillus flavus
CADAFLAG00002651
N
0.000
AFUA_3G10100
Aspergillus fumigatus
CADAFUAG00005849
N
0.000
Pa_4_8210
Podospora anserina
Pa_4_8210
N
0.000