LOC100072964 (Equus caballus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSECAG00000009996 T16824_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.986
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.972
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.972
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.972
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.931
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.931
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000007975 CSD 18 88

Links

Other CSD family RBPs
Other Equus caballus RBPs

201 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YB-1 Homo sapiens ENSG00000065978 D 0.958
ybx2-a Xenopus laevis AAI69706 D 0.972
YBX2 Homo sapiens ENSG00000006047 D 0.986
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.958
Csda Rattus norvegicus ENSRNOG00000005480 I 0.958
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.930
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.764
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 1.000
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.944
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.901
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.958
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.901
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.847
YBX2 Sorex araneus ENSSARG00000000488 I 0.986
CSDA Sus scrofa ENSSSCG00000000633 I 0.958
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.958
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.986
Ybx2 Mus musculus ENSMUSG00000018554 I 1.000
Ybx1 Mus musculus ENSMUSG00000028639 I 0.958
Csda Mus musculus ENSMUSG00000030189 I 0.958
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.958
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.958
YBX2 Ochotona princeps ENSOPRG00000013773 I 1.000
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.958
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.849
CSDA Procavia capensis ENSPCAG00000001397 I 0.901
YBX2 Procavia capensis ENSPCAG00000008019 I 1.000
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.958
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.958
CSDA Pan troglodytes ENSPTRG00000004681 I 0.958
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.901
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.833
YBX2 Sus scrofa ENSSSCG00000017938 I 1.000
AAA49716 Xenopus laevis AAA49716 I 0.972
AAA49924 Xenopus laevis AAA49924 I 0.958
AAH41191 Xenopus laevis AAH41191 I 0.958
AAH42217 Xenopus laevis AAH42217 I 0.958
AAI06324 Xenopus laevis AAI06324 I 0.958
AAI30161 Xenopus laevis AAI30161 I 0.958
AAI55914 Xenopus laevis AAI55914 I 0.958
AAI55915 Xenopus laevis AAI55915 I 0.972
AAI69704 Xenopus laevis AAI69704 I 0.972
CAA42778 Xenopus laevis CAA42778 I 0.958
P21573 Xenopus laevis P21573 I 0.958
P21574 Xenopus laevis P21574 I 0.972
P45441 Xenopus laevis P45441 I 0.958
AAA49715 Xenopus laevis AAA49715 I 0.958
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.833
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.958
YBX2 Tupaia belangeri ENSTBEG00000001266 I 1.000
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.958
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.958
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.958
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.958
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.958
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.845
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.958
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.958
csda Xenopus tropicalis ENSXETG00000016239 I 0.915
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.901
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.833
Q00436 Xenopus laevis Q00436 I 0.958
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.930
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.764
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.861
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.958
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.819
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.901
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.847
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.887
YBX2 Cavia porcellus ENSCPOG00000009543 I 1.000
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.958
CSDA Cavia porcellus ENSCPOG00000011329 I 0.958
ybx1 Danio rerio ENSDARG00000004757 I 0.958
Csda Dipodomys ordii ENSDORG00000009103 I 0.958
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.958
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.986
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.930
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 1.000
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.958
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.958
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.901
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.958
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.806
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.944
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.958
YBX2 Canis familiaris ENSCAFG00000016128 I 1.000
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.958
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.764
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.958
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.833
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.944
YBX2 Loxodonta africana ENSLAFG00000014006 I 1.000
CSDA Loxodonta africana ENSLAFG00000017247 I 0.958
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.958
YBX1 Microcebus murinus ENSMICG00000014984 I 0.958
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.931
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.930
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.958
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.958
CSDA Macaca mulatta ENSMMUG00000022469 I 0.958
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.986
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.944
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.958
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.986
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.958
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.944
LOC100065107 Equus caballus ENSECAG00000013777 I 0.958
LOC100067336 Equus caballus ENSECAG00000023592 I 0.958
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.958
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.901
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.958
CSDA Echinops telfairi ENSETEG00000002557 I 0.958
CSDA Homo sapiens ENSG00000060138 I 0.958
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.958
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.849
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.958
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.958
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.958
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.986
CSDA Monodelphis domestica ENSMODG00000018248 I 0.944