Ybx1 (Rattus norvegicus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSRNOG00000032902 T17004_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.944
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.944
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.889
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.889
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.889
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.875
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000048698 CSD 56 126

Links

Other CSD family RBPs
Other Rattus norvegicus RBPs

189 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.944
LOC100067336 Equus caballus ENSECAG00000023592 I 0.944
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.944
YBX1 Microcebus murinus ENSMICG00000014984 I 0.944
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.944
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.944
CSDA Loxodonta africana ENSLAFG00000017247 I 0.944
LOC100065107 Equus caballus ENSECAG00000013777 I 0.944
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.944
Ybx1 Mus musculus ENSMUSG00000028639 I 0.944
CAA42778 Xenopus laevis CAA42778 I 0.944
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.944
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.944
CSDA Macaca mulatta ENSMMUG00000022469 I 0.944
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.944
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.944
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.944
P21573 Xenopus laevis P21573 I 0.944
Q00436 Xenopus laevis Q00436 I 0.944
AAH41191 Xenopus laevis AAH41191 I 0.944
AAH42217 Xenopus laevis AAH42217 I 0.944
AAI30161 Xenopus laevis AAI30161 I 0.944
AAI06324 Xenopus laevis AAI06324 I 0.944
AAA49715 Xenopus laevis AAA49715 I 0.944
CSDA Homo sapiens ENSG00000060138 I 0.944
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.944
CSDA Echinops telfairi ENSETEG00000002557 I 0.944
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.944
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.944
YB-1 Homo sapiens ENSG00000065978 D 0.944
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.944
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.944
Csda Mus musculus ENSMUSG00000030189 I 0.944
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.944
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.944
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.944
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.944
Csda Rattus norvegicus ENSRNOG00000005480 I 0.944
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.944
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.944
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.944
CSDA Cavia porcellus ENSCPOG00000011329 I 0.944
CSDA Sus scrofa ENSSSCG00000000633 I 0.944
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.944
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.944
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.944
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.944
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.944
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.944
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.944
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.944
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.944
Csda Dipodomys ordii ENSDORG00000009103 I 0.944
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.944
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.944
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.944
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.944
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.944
ybx1 Danio rerio ENSDARG00000004757 I 0.944
CSDA Pan troglodytes ENSPTRG00000004681 I 0.944
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.930
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.930
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.930
CSDA Monodelphis domestica ENSMODG00000018248 I 0.930
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.930
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.917
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.915
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.915
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.915
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.915
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.915
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.901
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.901
Ybx2 Mus musculus ENSMUSG00000018554 I 0.901
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.901
AAI55915 Xenopus laevis AAI55915 I 0.901
YBX2 Procavia capensis ENSPCAG00000008019 I 0.901
csda Xenopus tropicalis ENSXETG00000016239 I 0.901
YBX2 Sus scrofa ENSSSCG00000017938 I 0.901
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.901
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.901
YBX2 Canis familiaris ENSCAFG00000016128 I 0.901
LOC100072964 Equus caballus ENSECAG00000009996 I 0.901
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.901
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.901
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.901
P21574 Xenopus laevis P21574 I 0.901
ybx2-a Xenopus laevis AAI69706 D 0.901
AAI69704 Xenopus laevis AAI69704 I 0.901
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.901
AAA49716 Xenopus laevis AAA49716 I 0.901
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.887
AAI55914 Xenopus laevis AAI55914 I 0.887
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.887
YBX2 Sorex araneus ENSSARG00000000488 I 0.887
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.887
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.887
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.887
AAA49924 Xenopus laevis AAA49924 I 0.887
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.887
YBX2 Homo sapiens ENSG00000006047 D 0.887
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.887
P45441 Xenopus laevis P45441 I 0.887
CSDA Procavia capensis ENSPCAG00000001397 I 0.873
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.873
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.873
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.833
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.833
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.833
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.833
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.833
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.819
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.819
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.819
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.819
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.819
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.817
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.806
CSDA Vicugna pacos ENSVPAG00000000876 I 0.803
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.803
CSDA Microcebus murinus ENSMICG00000004602 I 0.803
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.797
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.795
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.795
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.792
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.781
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.781
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.778
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.778
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.778
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.778
ISCW005281 Ixodes scapularis ISCW005281 I 0.778
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.778
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.778
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.775
GM24682 Drosophila sechellia FBgn0179545 I 0.764
GE20150 Drosophila yakuba FBgn0237472 I 0.764
GD12750 Drosophila simulans FBgn0184477 I 0.764
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.764
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.764
PHUM156710 Pediculus humanus PHUM156710 I 0.764
yps Drosophila melanogaster FBgn0022959 I 0.764
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.764
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.764
YBX1 Sorex araneus ENSSARG00000012628 I 0.764
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.764
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.764
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.753
PHUM156720 Pediculus humanus PHUM156720 I 0.750
GK16710 Drosophila willistoni FBgn0218712 I 0.750
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.750
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.750
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.750
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.750
GI13673 Drosophila mojavensis FBgn0136428 I 0.750
GH16919 Drosophila grimshawi FBgn0124390 I 0.750
GF10852 Drosophila ananassae FBgn0087892 I 0.750
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.750
GJ14010 Drosophila virilis FBgn0201228 I 0.750
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.750
GL15684 Drosophila persimilis FBgn0153288 I 0.750
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.750
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.750
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.740
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.736
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.736
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.736
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.736
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.736
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.736
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.736
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.736
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.736
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.736
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.722
AGAP006108 Anopheles gambiae AGAP006108 I 0.722
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.722
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.722
AAEL001375 Aedes aegypti AAEL001375 I 0.722
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.722
Bm1_57515 Brugia malayi Bm1_57515 I 0.722
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.722
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.712
CRE01789 Caenorhabditis remanei CRE01789 I 0.708
CBN16711 Caenorhabditis brenneri CBN16711 I 0.708
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.708
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.708
cey-1 Caenorhabditis elegans F33A8.3 I 0.708
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.708