ENSCJAG00000031567 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000031567 T16792_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.901
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.901
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.833
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.833
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.833
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.819
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000049529 CSD 42 111

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

169 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.875
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.861
Csda Rattus norvegicus ENSRNOG00000005480 I 0.861
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.861
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.861
CSDA Sus scrofa ENSSSCG00000000633 I 0.861
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.861
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.861
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.861
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.861
CSDA Pan troglodytes ENSPTRG00000004681 I 0.861
Csda Mus musculus ENSMUSG00000030189 I 0.861
Ybx1 Mus musculus ENSMUSG00000028639 I 0.861
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.861
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.861
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.861
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.861
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.861
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.861
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.861
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.861
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.861
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.861
Q00436 Xenopus laevis Q00436 I 0.861
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.861
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.861
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.861
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.861
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.861
P21573 Xenopus laevis P21573 I 0.861
CAA42778 Xenopus laevis CAA42778 I 0.861
AAA49715 Xenopus laevis AAA49715 I 0.861
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.861
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.861
AAH41191 Xenopus laevis AAH41191 I 0.861
AAH42217 Xenopus laevis AAH42217 I 0.861
AAI30161 Xenopus laevis AAI30161 I 0.861
AAI06324 Xenopus laevis AAI06324 I 0.861
CSDA Macaca mulatta ENSMMUG00000022469 I 0.861
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.861
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.861
YB-1 Homo sapiens ENSG00000065978 D 0.861
CSDA Echinops telfairi ENSETEG00000002557 I 0.861
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.861
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.861
CSDA Loxodonta africana ENSLAFG00000017247 I 0.861
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.861
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.861
CSDA Cavia porcellus ENSCPOG00000011329 I 0.861
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.861
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.861
LOC100067336 Equus caballus ENSECAG00000023592 I 0.861
LOC100065107 Equus caballus ENSECAG00000013777 I 0.861
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.861
Csda Dipodomys ordii ENSDORG00000009103 I 0.861
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.861
ybx1 Danio rerio ENSDARG00000004757 I 0.861
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.861
CSDA Homo sapiens ENSG00000060138 I 0.861
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.861
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.861
YBX1 Microcebus murinus ENSMICG00000014984 I 0.861
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.847
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.847
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.847
CSDA Monodelphis domestica ENSMODG00000018248 I 0.847
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.833
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.833
csda Xenopus tropicalis ENSXETG00000016239 I 0.833
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.833
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.833
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.829
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.829
YBX2 Procavia capensis ENSPCAG00000008019 I 0.819
Ybx2 Mus musculus ENSMUSG00000018554 I 0.819
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.819
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.819
AAA49716 Xenopus laevis AAA49716 I 0.819
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.819
LOC100072964 Equus caballus ENSECAG00000009996 I 0.819
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.819
AAI55915 Xenopus laevis AAI55915 I 0.819
YBX2 Canis familiaris ENSCAFG00000016128 I 0.819
ybx2-a Xenopus laevis AAI69706 D 0.819
AAI69704 Xenopus laevis AAI69704 I 0.819
P21574 Xenopus laevis P21574 I 0.819
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.819
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.819
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.819
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.819
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.819
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.819
YBX2 Sus scrofa ENSSSCG00000017938 I 0.819
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.817
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.817
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.806
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.806
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.806
P45441 Xenopus laevis P45441 I 0.806
YBX2 Sorex araneus ENSSARG00000000488 I 0.806
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.806
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.806
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.806
YBX2 Homo sapiens ENSG00000006047 D 0.806
AAI55914 Xenopus laevis AAI55914 I 0.806
AAA49924 Xenopus laevis AAA49924 I 0.806
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.806
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.803
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.803
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.795
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.792
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.792
CSDA Procavia capensis ENSPCAG00000001397 I 0.792
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.789
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.789
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.789
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.778
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.778
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.775
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.764
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.764
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.761
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.761
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.761
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.761
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.761
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.761
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.761
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.746
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.746
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.746
PHUM156710 Pediculus humanus PHUM156710 I 0.746
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.732
GF10852 Drosophila ananassae FBgn0087892 I 0.732
GI13673 Drosophila mojavensis FBgn0136428 I 0.732
GL15684 Drosophila persimilis FBgn0153288 I 0.732
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.732
GH16919 Drosophila grimshawi FBgn0124390 I 0.732
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.732
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.732
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.732
GK16710 Drosophila willistoni FBgn0218712 I 0.732
GJ14010 Drosophila virilis FBgn0201228 I 0.732
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.732
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.732
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.732
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.732
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.732
ISCW005281 Ixodes scapularis ISCW005281 I 0.732
PHUM156720 Pediculus humanus PHUM156720 I 0.732
CSDA Microcebus murinus ENSMICG00000004602 I 0.722
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.722
CSDA Vicugna pacos ENSVPAG00000000876 I 0.722
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.722
GE20150 Drosophila yakuba FBgn0237472 I 0.718
GM24682 Drosophila sechellia FBgn0179545 I 0.718
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.718
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.718
yps Drosophila melanogaster FBgn0022959 I 0.718
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.718
GD12750 Drosophila simulans FBgn0184477 I 0.718
YBX1 Sorex araneus ENSSARG00000012628 I 0.718
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.708
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.704
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.704
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.704
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.704
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.704
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.704