ENSCAFG00000007977 (Canis familiaris)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCAFG00000007977 T16762_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.873
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.873
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.806
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.806
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.806
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000035469 CSD 56 125

Links

Other CSD family RBPs
Other Canis familiaris RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.847
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.847
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.847
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.847
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.847
CSDA Pan troglodytes ENSPTRG00000004681 I 0.847
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.847
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.847
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.847
Csda Mus musculus ENSMUSG00000030189 I 0.847
Ybx1 Mus musculus ENSMUSG00000028639 I 0.847
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.847
CSDA Loxodonta africana ENSLAFG00000017247 I 0.847
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.847
YBX1 Microcebus murinus ENSMICG00000014984 I 0.847
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.847
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.847
CSDA Macaca mulatta ENSMMUG00000022469 I 0.847
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.847
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.847
CSDA Sus scrofa ENSSSCG00000000633 I 0.847
CAA42778 Xenopus laevis CAA42778 I 0.847
AAI30161 Xenopus laevis AAI30161 I 0.847
AAI06324 Xenopus laevis AAI06324 I 0.847
AAH42217 Xenopus laevis AAH42217 I 0.847
P21573 Xenopus laevis P21573 I 0.847
Q00436 Xenopus laevis Q00436 I 0.847
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.847
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.847
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.847
AAH41191 Xenopus laevis AAH41191 I 0.847
AAA49715 Xenopus laevis AAA49715 I 0.847
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.847
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.847
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.847
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.847
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.847
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.847
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.847
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.847
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.847
Csda Rattus norvegicus ENSRNOG00000005480 I 0.847
CSDA Cavia porcellus ENSCPOG00000011329 I 0.847
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.847
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.847
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.847
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.847
LOC100067336 Equus caballus ENSECAG00000023592 I 0.847
LOC100065107 Equus caballus ENSECAG00000013777 I 0.847
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.847
Csda Dipodomys ordii ENSDORG00000009103 I 0.847
ybx1 Danio rerio ENSDARG00000004757 I 0.847
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.847
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.847
CSDA Echinops telfairi ENSETEG00000002557 I 0.847
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.847
YB-1 Homo sapiens ENSG00000065978 D 0.847
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.847
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.847
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.847
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.847
CSDA Homo sapiens ENSG00000060138 I 0.847
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.833
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.833
CSDA Monodelphis domestica ENSMODG00000018248 I 0.833
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.833
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.833
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.833
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.819
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.819
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.819
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.819
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.806
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.806
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.806
YBX2 Sus scrofa ENSSSCG00000017938 I 0.806
csda Xenopus tropicalis ENSXETG00000016239 I 0.806
AAA49716 Xenopus laevis AAA49716 I 0.806
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.806
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.806
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.806
Ybx2 Mus musculus ENSMUSG00000018554 I 0.806
YBX2 Canis familiaris ENSCAFG00000016128 I 0.806
P21574 Xenopus laevis P21574 I 0.806
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.806
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.806
ybx2-a Xenopus laevis AAI69706 D 0.806
AAI69704 Xenopus laevis AAI69704 I 0.806
LOC100072964 Equus caballus ENSECAG00000009996 I 0.806
YBX2 Procavia capensis ENSPCAG00000008019 I 0.806
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.806
AAI55915 Xenopus laevis AAI55915 I 0.806
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.803
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.803
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.803
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.803
AAI55914 Xenopus laevis AAI55914 I 0.792
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.792
AAA49924 Xenopus laevis AAA49924 I 0.792
P45441 Xenopus laevis P45441 I 0.792
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.792
YBX2 Homo sapiens ENSG00000006047 D 0.792
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.792
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.792
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.792
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.792
YBX2 Sorex araneus ENSSARG00000000488 I 0.792
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.792
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.789
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.789
CSDA Procavia capensis ENSPCAG00000001397 I 0.778
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.778
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.775
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.775
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.767
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.761
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.761
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.761
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.761
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.750
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.750
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.746
YBX1 Sorex araneus ENSSARG00000012628 I 0.746
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.746
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.736
CSDA Microcebus murinus ENSMICG00000004602 I 0.736
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.736
CSDA Vicugna pacos ENSVPAG00000000876 I 0.736
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.732
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.732
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.732
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.732
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.732
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.732
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.732
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.732
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.718
PHUM156710 Pediculus humanus PHUM156710 I 0.718
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.718
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.718
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.718
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.718
ISCW005281 Ixodes scapularis ISCW005281 I 0.718
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.718
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.718
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.708
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.708
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.704
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.704
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.704
GL15684 Drosophila persimilis FBgn0153288 I 0.704
GM24682 Drosophila sechellia FBgn0179545 I 0.704
GI13673 Drosophila mojavensis FBgn0136428 I 0.704
GH16919 Drosophila grimshawi FBgn0124390 I 0.704
yps Drosophila melanogaster FBgn0022959 I 0.704
GF10852 Drosophila ananassae FBgn0087892 I 0.704
GD12750 Drosophila simulans FBgn0184477 I 0.704
GJ14010 Drosophila virilis FBgn0201228 I 0.704
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.704
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.704
PHUM156720 Pediculus humanus PHUM156720 I 0.704
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.704
GK16710 Drosophila willistoni FBgn0218712 I 0.704
GE20150 Drosophila yakuba FBgn0237472 I 0.704
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.704