CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE21305
(
Drosophila yakuba
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0238572
T17108_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0266315
CSD
191
256
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0266315
CSD
279
342
SANNVLNSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0266315
CSD
350
418
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNITR
FBpp0266315
CSD
522
589
REQGTIASLKEGFGFLRCVERQARLFFHFTEVLDTSREIDINDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0266315
CSD
768
829
VYRGFIAVMKENFGFIETLSHDEEVFFHFSNYMGNPNWLELGQEVEYTLARNGNTSVSGNCL
FBpp0266315
CSD
927
993
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGSTVALHPGDTVEFSVVTNQRNGKSSACNVLKI
Links
Other
CSD
family RBPs
Other
Drosophila yakuba
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010018
Aedes aegypti
AAEL010018
N
0.738
GK17751
Drosophila willistoni
FBgn0219750
N
0.960
GJ12391
Drosophila virilis
FBgn0199634
N
0.905
GM24938
Drosophila sechellia
FBgn0179800
N
0.997
GI12487
Drosophila mojavensis
FBgn0135244
N
0.962
GH16406
Drosophila grimshawi
FBgn0123877
N
0.967
GG15082
Drosophila erecta
FBgn0107336
N
0.997
GF10107
Drosophila ananassae
FBgn0087148
N
0.975
Unr
Drosophila melanogaster
FBgn0035895
N
0.997
AGAP004937
Anopheles gambiae
AGAP004937
N
0.749
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.967