PUM1 (Sus scrofa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSSSCG00000003591 T24270_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.982
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.982
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.908
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.908
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.908
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.908
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.908
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.773
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.773
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.773
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.773
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.773
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.773
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000003895 PUF 399 433
ENSSSCP00000003895 PUF 435 467
ENSSSCP00000003895 PUF 471 503
ENSSSCP00000003895 PUF 509 543
ENSSSCP00000003895 PUF 545 579
ENSSSCP00000003895 PUF 581 615
ENSSSCP00000003895 PUF 617 647
ENSSSCP00000003895 PUF 663 694

Links

Other PUF family RBPs
Other Sus scrofa RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm25495 Apis mellifera amel4_ncbi_hmm25495 N 0.000
GJ15458 Drosophila virilis FBgn0202651 N 0.000
GK17513 Drosophila willistoni FBgn0219512 N 0.000
GE21342 Drosophila yakuba FBgn0238604 N 0.000
PHUM582400 Pediculus humanus PHUM582400 N 0.000
e_gw1.29.70.1 Daphnia pulex e_gw1.29.70.1 N 0.000
fgenesh2_pg.scaffold_154000069 Branchiostoma floridae fgenesh2_pg.scaffold_154000069 N 0.000
XP_001178699.1 Strongylocentrotus purpuratus XP_001178699.1 N 0.000
XP_001184765.1 Strongylocentrotus purpuratus XP_001184765.1 N 0.000
GM14551 Drosophila sechellia FBgn0169472 N 0.000
GI12555 Drosophila mojavensis FBgn0135312 N 0.000
DGIL_AUG5s5549g4t1 Acyrtosiphon pisum DGIL_AUG5s5549g4t1 N 0.000
nasonia_NCBI_hmm376894 Nasonia vitripennis nasonia_NCBI_hmm376894 N 0.000
AAEL010841 Aedes aegypti AAEL010841 N 0.000
AGAP006460 Anopheles gambiae AGAP006460 N 0.000
CG11505 Drosophila melanogaster FBgn0035424 N 0.000
GA11040-RA Drosophila pseudoobscura FBgn0071096 N 0.000
GF10124 Drosophila ananassae FBgn0087165 N 0.000
GG15116 Drosophila erecta FBgn0107369 N 0.000
XP_798222.2 Strongylocentrotus purpuratus XP_798222.2 N 0.000