PUM1 (Sus scrofa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSSSCG00000003591 T24270_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.982
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.982
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.908
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.908
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.908
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.908
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.908
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.773
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.773
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.773
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.773
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.773
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.773
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000003895 PUF 399 433
ENSSSCP00000003895 PUF 435 467
ENSSSCP00000003895 PUF 471 503
ENSSSCP00000003895 PUF 509 543
ENSSSCP00000003895 PUF 545 579
ENSSSCP00000003895 PUF 581 615
ENSSSCP00000003895 PUF 617 647
ENSSSCP00000003895 PUF 663 694

Links

Other PUF family RBPs
Other Sus scrofa RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.996
PUM1 Homo sapiens ENSG00000134644 D 0.996
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.996
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.996
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.993
PUM1 Canis familiaris ENSCAFG00000011205 I 0.993
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.993
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.989
PUM1 Sorex araneus ENSSARG00000003055 I 0.989
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.989
PUM1 Bos taurus ENSBTAG00000018979 I 0.985
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.985
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.982
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.981
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.981
Pum1 Mus musculus ENSMUSG00000028580 I 0.981
PUM1 Equus caballus ENSECAG00000021369 I 0.978
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.978
PUM1 Microcebus murinus ENSMICG00000007713 I 0.971
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.967
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.967
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.967
BAC57980 Xenopus laevis BAC57980 I 0.963
AAH80379 Xenopus laevis AAH80379 I 0.963
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.960
AAL14121 Xenopus laevis AAL14121 I 0.960
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.948
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.948
PUM1 Oryzias latipes ENSORLG00000011482 I 0.941
BAB20864 Xenopus laevis BAB20864 I 0.938
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.930
PUM2 Canis familiaris ENSCAFG00000003839 I 0.908
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.908
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.908
Pum2 Mus musculus ENSMUSG00000020594 D 0.908
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.908
PUM2 Homo sapiens ENSG00000055917 D 0.908
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.908
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.908
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.908
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.908
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.905
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.905
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.897
PUM2 Equus caballus ENSECAG00000021930 I 0.895
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.895
PUM2 Sus scrofa ENSSSCG00000008600 I 0.895
PUM2 Bos taurus ENSBTAG00000011155 I 0.895
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.891
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.891
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.891
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.890
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.887
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.886
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.882
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.882
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.879
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.875
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.868
PUM2 Oryzias latipes ENSORLG00000012611 I 0.864
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.806
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.806
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.805
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.795
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.789
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.786
PHUM490070 Pediculus humanus PHUM490070 I 0.783
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.781
pum Drosophila melanogaster FBgn0003165 D 0.773
GM26283 Drosophila sechellia FBgn0181138 I 0.773
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.771
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.770
AAEL012420 Aedes aegypti AAEL012420 I 0.770
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.770
GE24797 Drosophila yakuba FBgn0241899 I 0.770
GF18428 Drosophila ananassae FBgn0095446 I 0.770
GK14049 Drosophila willistoni FBgn0216055 I 0.770
GG17394 Drosophila erecta FBgn0109620 I 0.770
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.766
GI22503 Drosophila mojavensis FBgn0145231 I 0.766
GH15257 Drosophila grimshawi FBgn0122732 I 0.766
AGAP003914 Anopheles gambiae AGAP003914 I 0.765
GJ10105 Drosophila virilis FBgn0197393 I 0.763
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.763
GL22345 Drosophila persimilis FBgn0159937 I 0.759
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.759
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.759
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.756