Ame_R012380 (Ailuropoda melanoleuca)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Ame_R012380 T25044_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.985
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.985
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.901
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.901
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.901
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.901
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.901
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.777
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.777
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.777
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.777
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.777
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.777
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R012380 PUF 853 887
Ame_R012380 PUF 889 921
Ame_R012380 PUF 925 956
Ame_R012380 PUF 963 997
Ame_R012380 PUF 999 1033
Ame_R012380 PUF 1035 1069
Ame_R012380 PUF 1071 1101
Ame_R012380 PUF 1117 1148

Links

Other PUF family RBPs
Other Ailuropoda melanoleuca RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RAVER2 Canis familiaris ENSCAFG00000018617 N 0.000
RAVER2 Pteropus vampyrus ENSPVAG00000007172 N 0.000
RAVER2 Otolemur garnettii ENSOGAG00000011157 N 0.000
RAVER2 Oryctolagus cuniculus ENSOCUG00000006221 N 0.000
RAVER2 Ornithorhynchus anatinus ENSOANG00000008327 N 0.000
RAVER2 Monodelphis domestica ENSMODG00000001242 N 0.000
RAVER2 Meleagris gallopavo ENSMGAG00000011806 N 0.000
RAVER2 Loxodonta africana ENSLAFG00000012508 N 0.000
RAVER2 Gorilla gorilla ENSGGOG00000016447 N 0.000
RAVER2 Gallus gallus ENSGALG00000011026 N 0.000
RAVER2 Equus caballus ENSECAG00000022014 N 0.000
Raver2 Dipodomys ordii ENSDORG00000002498 N 0.000
RAVER2 Tupaia belangeri ENSTBEG00000009004 N 0.000