CPIJ000395 (Culex quinquefasciatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CPIJ000395 T34195_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.839
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.728
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.728
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.728
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.719
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.719
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CPIJ000395-PA RRM 46 116
CPIJ000395-PA RRM 132 213
CPIJ000395-PA RRM 284 354

Links

Other RRM family RBPs
Other Culex quinquefasciatus RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL4 Homo sapiens ENSG00000162374 D 0.728
ELAVL2 Homo sapiens ENSG00000107105 D 0.719
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.702
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.719
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.702
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.728
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.719
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.728
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.719
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.702
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.701
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.728
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.719
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.000
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.719
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.719
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.728
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.719
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.728
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.720
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.716
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.723
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.728
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.000
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.728
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.719
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.728
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.000
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.723
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.720
AAA96943 Xenopus laevis AAA96943 I 0.716
AAA96944 Xenopus laevis AAA96944 I 0.702
AAA96945 Xenopus laevis AAA96945 I 0.723
AAH94189 Xenopus laevis AAH94189 I 0.719
AAH99348 Xenopus laevis AAH99348 I 0.723
AAI69769 Xenopus laevis AAI69769 I 0.702
AAI70539 Xenopus laevis AAI70539 I 0.719
CAA59430 Xenopus laevis CAA59430 I 0.711
CBF67567 Xenopus laevis CBF67567 I 0.723
CBU92440 Xenopus laevis CBU92440 I 0.723
Q91584 Xenopus laevis Q91584 I 0.702
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.728
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.702
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.719
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.723
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.719
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.716
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.728
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.000
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.702
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.719
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.719
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.728
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.723
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.702
Q91903 Xenopus laevis Q91903 I 0.716
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.702
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.702
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.728
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.000
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.719
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.728
ELAVL2 Equus caballus ENSECAG00000020142 I 0.719
LOC100056901 Equus caballus ENSECAG00000020594 I 0.000
LOC100051268 Equus caballus ENSECAG00000022284 I 0.728
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.728
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.719
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.728
ELAVL3 Homo sapiens ENSG00000196361 I 0.702
elavl4 Danio rerio ENSDARG00000045639 I 0.728
elavl2 Danio rerio ENSDARG00000040732 I 0.728
elavl3 Danio rerio ENSDARG00000014420 I 0.720
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.719
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.702
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.728
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.719
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.728
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.702
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.728
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.719
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.728
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.728
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.719
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.723
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.716
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.728
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.714
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.719
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.728
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.728
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.719
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.000
Elavl3 Mus musculus ENSMUSG00000003410 I 0.702
Elavl2 Mus musculus ENSMUSG00000008489 I 0.719
Elavl4 Mus musculus ENSMUSG00000028546 I 0.728
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.719
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.728
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.724
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.719
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.728
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.710
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.728
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.719
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.702
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.728
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.702
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.719
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.728
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.702
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.728
ELAVL3 Myotis lucifugus ENSMLUG00000016320 N 0.000