CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A1L532_BOVIN
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000016929
T34888_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000022514
RRM
9
78
LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVE
ENSBTAP00000022514
RRM
100
169
LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVE
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPA0
Canis familiaris
ENSCAFG00000001132
N
1.000
HNRNPA0
Oryzias latipes
ENSORLG00000000221
N
0.714
ENSPPYG00000015814
Pongo pygmaeus
ENSPPYG00000015814
N
1.000
HNRNPA0
Pan troglodytes
ENSPTRG00000017273
N
1.000
Hnrnpa0
Rattus norvegicus
ENSRNOG00000039876
N
0.957
HNRNPA0
Sus scrofa
ENSSSCG00000014322
N
1.000
HNRNPA0
Taeniopygia guttata
ENSTGUG00000001186
N
0.857
HNRNPA0
Tetraodon nigroviridis
ENSTNIG00000007398
N
0.721
HNRNPA0
Takifugu rubripes
ENSTRUG00000015362
N
0.721
HNRNPA0
Tursiops truncatus
ENSTTRG00000000499
N
1.000
hnrnpa0
Xenopus tropicalis
ENSXETG00000003833
N
0.814
Ame_R010989
Ailuropoda melanoleuca
Ame_R010989
N
1.000
AAH41277
Xenopus laevis
AAH41277
N
0.786
AAH45023
Xenopus laevis
AAH45023
N
0.786
AAH71067
Xenopus laevis
AAH71067
N
0.786
HNRNPA0
Oryctolagus cuniculus
ENSOCUG00000005703
N
0.993
HNRNPA0
Ornithorhynchus anatinus
ENSOANG00000012169
N
0.921
Hnrnpa0
Mus musculus
ENSMUSG00000007836
N
0.986
LOC100399260
Callithrix jacchus
ENSCJAG00000006112
N
0.993
HNRNPA0
Cavia porcellus
ENSCPOG00000026092
N
0.993
hnrnpa0
Danio rerio
ENSDARG00000036162
N
0.700
HNRNPA0
Homo sapiens
ENSG00000177733
N
1.000
HNRNPA0
Gasterosteus aculeatus
ENSGACG00000016447
N
0.721
HNRNPA0
Gallus gallus
ENSGALG00000006160
N
0.914
HNRNPA0
Gorilla gorilla
ENSGGOG00000023303
N
1.000
HNRNPA0
Loxodonta africana
ENSLAFG00000028290
N
1.000
ENSMEUG00000008352
Macropus eugenii
ENSMEUG00000008352
N
0.707
ENSMEUG00000013675
Macropus eugenii
ENSMEUG00000013675
N
0.979
HNRNPA0
Meleagris gallopavo
ENSMGAG00000007915
N
0.914
HNRNPA0
Macaca mulatta
ENSMMUG00000011929
N
1.000
XM_001373740.1
Monodelphis domestica
ENSMODG00000002463
N
0.743
HNRNPA0
Monodelphis domestica
ENSMODG00000014720
N
0.986
AAI06306
Xenopus laevis
AAI06306
N
0.786