ENSCPOG00000010284 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000010284 T35824_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.985
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.716
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.711
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000009234 RRM 64 131
ENSCPOP00000009234 RRM 144 211
ENSCPOP00000009234 RRM 239 303

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.723
RBM46 Homo sapiens ENSG00000151962 D 0.985
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.728
Rbm46 Mus musculus ENSMUSG00000033882 I 0.975
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.728
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.985
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.728
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.985
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.723
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.985
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.985
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.724
RBM47 Procavia capensis ENSPCAG00000011879 I 0.728
Rbm47 Mus musculus ENSMUSG00000070780 I 0.723
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.936
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.723
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.728
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.985
RBM46 Ochotona princeps ENSOPRG00000007136 I 0.876
RBM46 Oryzias latipes ENSORLG00000002429 I 0.707
RBM47 Oryzias latipes ENSORLG00000005847 I 0.713
RBM47 Sorex araneus ENSSARG00000001735 I 0.728
RBM46 Sorex araneus ENSSARG00000006520 I 0.985
RBM47 Sus scrofa ENSSSCG00000008796 I 0.728
RBM46_XENTR Xenopus tropicalis ENSXETG00000022412 I 0.828
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.711
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.714
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.719
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.702
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.728
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.985
XP_001196183.1 Strongylocentrotus purpuratus XP_001196183.1 I 0.719
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.728
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.965
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.975
RBM46 Sus scrofa ENSSSCG00000008994 I 0.985
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.970
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.920
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.728
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.708
RBM46 Tetraodon nigroviridis ENSTNIG00000008714 I 0.722
RBM46 Takifugu rubripes ENSTRUG00000004237 I 0.746
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.708
XP_781163.1 Strongylocentrotus purpuratus XP_781163.1 I 0.719
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.728
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.950
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.703
RBM47 Danio rerio ENSDARG00000061985 I 0.713
rbm46 Danio rerio ENSDARG00000079452 I 0.801
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.728
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.975
Rbm46 Dipodomys ordii ENSDORG00000006405 I 0.950
LOC100063743 Equus caballus ENSECAG00000004400 I 0.718
ENSCPOG00000019272 Cavia porcellus ENSCPOG00000019272 I 0.970
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.728
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.728
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.980
RBM46 Bos taurus ENSBTAG00000001696 I 0.980
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.728
RBM46 Canis familiaris ENSCAFG00000008473 I 0.985
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.718
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.985
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.728
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.975
RBM46 Equus caballus ENSECAG00000007649 I 0.970
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.940
RBM47 Macropus eugenii ENSMEUG00000009516 I 0.738
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.980
RBM46 Meleagris gallopavo ENSMGAG00000001457 I 0.773
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.728
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.980
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.728
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.985
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.985
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.980
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.728
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.985
RBM47 Echinops telfairi ENSETEG00000009194 I 0.728
RBM46 Echinops telfairi ENSETEG00000014902 I 0.985
RBM46 Felis catus ENSFCAG00000009246 I 0.970
RBM47 Felis catus ENSFCAG00000012399 I 0.728
RBM47 Homo sapiens ENSG00000163694 I 0.728
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.713
RBM46 Gallus gallus ENSGALG00000009278 I 0.857
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.728
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 0.738