CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM23
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000024448
T39221_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000006286
RRM
153
221
VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI
ENSMODP00000006286
RRM
250
320
LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALEQLNGFELAGRPMR
ENSMODP00000034175
RRM
163
231
VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI
ENSMODP00000034175
RRM
260
330
LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALEQLNGFELAGRPMR
ENSMODP00000034177
RRM
168
236
VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI
ENSMODP00000034177
RRM
265
335
LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDPDTGRSKGFGFLTFSDSECARRALEQLNGFELAGRPMR
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG1218
Drosophila melanogaster
FBgn0037377
N
0.000
GK13433
Drosophila willistoni
FBgn0215441
N
0.000
GJ23331
Drosophila virilis
FBgn0210432
N
0.000
GD19822
Drosophila simulans
FBgn0191311
N
0.000
GM10841
Drosophila sechellia
FBgn0165787
N
0.000
GL24525
Drosophila persimilis
FBgn0162114
N
0.000
GI10110
Drosophila mojavensis
FBgn0132876
N
0.000
GH18157
Drosophila grimshawi
FBgn0125625
N
0.000
GA11459-RA
Drosophila pseudoobscura
FBgn0071510
N
0.000
GE10166
Drosophila yakuba
FBgn0228044
N
0.000