CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSOCUG00000020937
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000020937
T39737_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000017056
RRM
37
107
VFVGGLPYELTEGDILCVFSQYGEIVNIHLVRDKKTGKSRGFGFICYEDQRSTVLAVDNFNGIKIKGRTIR
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH56844
Xenopus laevis
AAH56844
N
0.775
GL26176
Drosophila persimilis
FBgn0163758
N
0.703
GG21207
Drosophila erecta
FBgn0113387
N
0.703
GF14433
Drosophila ananassae
FBgn0091460
N
0.703
GA10331-RA
Drosophila pseudoobscura
FBgn0070389
N
0.703
RBMX2
Tursiops truncatus
ENSTTRG00000016210
N
0.787
RBMX2
Tarsius syrichta
ENSTSYG00000010611
N
0.716
RBMX2
Takifugu rubripes
ENSTRUG00000001699
N
0.797
RBMX2
Tetraodon nigroviridis
ENSTNIG00000007672
N
0.784
RBMX2
Spermophilus tridecemlineatus
ENSSTOG00000015391
N
0.787
RBMX2
Sorex araneus
ENSSARG00000007350
N
0.784
Rbmx2
Rattus norvegicus
ENSRNOG00000007371
N
0.800
RBMX2
Pteropus vampyrus
ENSPVAG00000004425
N
0.787
XR_023755.1
Pan troglodytes
ENSPTRG00000022269
N
0.760
ENSPPYG00000020717
Pongo pygmaeus
ENSPPYG00000020717
N
0.760
RBMX2
Procavia capensis
ENSPCAG00000012903
N
0.747
RBMX2
Oryzias latipes
ENSORLG00000013183
N
0.811
ENSOGAG00000009060
Otolemur garnettii
ENSOGAG00000009060
N
0.747
GJ13600
Drosophila virilis
FBgn0200822
N
0.703
GK14925
Drosophila willistoni
FBgn0216930
N
0.716
PHUM617480
Pediculus humanus
PHUM617480
N
0.770
XP_791635.2
Strongylocentrotus purpuratus
XP_791635.2
N
0.757
XP_002164481.1
Hydra magnipapillata
XP_002164481.1
N
0.757
XP_001180915.1
Strongylocentrotus purpuratus
XP_001180915.1
N
0.757
Smp_170230
Schistosoma mansoni
Smp_170230
N
0.775
Ame_R006638
Ailuropoda melanoleuca
Ame_R006638
N
0.787
Sjc_0109550
Schistosoma japonicum
Sjc_0109550
N
0.775
gw1.7.1053.1
Ostreococcus RCC809
gw1.7.1053.1
N
0.703
gw1.6.253.1
Chlorella NC64A
gw1.6.253.1
N
0.746
gw1.462.53.1
Capitella teleta
gw1.462.53.1
N
0.730
gw.130.169.1
Nematostella vectensis
gw.130.169.1
N
0.716
gw1.1.945.1
Micromonas pusilla
gw1.1.945.1
N
0.703
fgenesh2_pg.C_sca_10000115
Lottia gigantea
fgenesh2_pg.C_sca_10000115
N
0.716
estExt_Genewise1Plus.C_110324
Daphnia pulex
estExt_Genewise1Plus.C_110324
N
0.703
estExt_fgenesh2_pg.C_1800064
Branchiostoma floridae
estExt_fgenesh2_pg.C_1800064
N
0.811
e_gw1.98.15.1
Volvox carteri
e_gw1.98.15.1
N
0.716
Aqu1.228439
Amphimedon queenslandica
Aqu1.228439
N
0.743
Aqu1.200557
Amphimedon queenslandica
Aqu1.200557
N
0.743
ENSOGAG00000006237
Otolemur garnettii
ENSOGAG00000006237
N
0.787
RBMX2
Oryctolagus cuniculus
ENSOCUG00000011809
N
0.750
RBMX2
Echinops telfairi
ENSETEG00000001763
N
0.760
RBMX2
Erinaceus europaeus
ENSEEUG00000000839
N
0.773
LOC100058600
Equus caballus
ENSECAG00000008257
N
0.787
rbmx2
Danio rerio
ENSDARG00000044380
N
0.797
RBMX2
Cavia porcellus
ENSCPOG00000006640
N
0.773
LOC100388331
Callithrix jacchus
ENSCJAG00000002436
N
0.787
RBMX2
Canis familiaris
ENSCAFG00000018770
N
0.766
LOC613705
Bos taurus
ENSBTAG00000014771
N
0.730
LOC534630
Bos taurus
ENSBTAG00000006252
N
0.757
RBMX2
Anolis carolinensis
ENSACAG00000008819
N
0.827
CPIJ015641
Culex quinquefasciatus
CPIJ015641
N
0.817
AGAP000977
Anopheles gambiae
AGAP000977
N
0.770
AAEL002461
Aedes aegypti
AAEL002461
N
0.757
nasonia_NCBI_hmm382923
Nasonia vitripennis
nasonia_NCBI_hmm382923
N
0.730
SPPG_01752
Spizellomyces punctatus
SPPG_01752
N
0.761
LOAG_03303
Loa loa
LOAG_03303
N
0.746
CpipJ_CPIJ015641
Culex pipiens
CpipJ_CPIJ015641
N
0.817
RBMX2
Homo sapiens
ENSG00000134597
N
0.787
RBMX2
Gasterosteus aculeatus
ENSGACG00000001855
N
0.797
RBMX2
Gallus gallus
ENSGALG00000004025
N
0.773
RBMX2
Ornithorhynchus anatinus
ENSOANG00000001362
N
0.766
Rbmx2
Mus musculus
ENSMUSG00000031107
N
0.813
ENSMODG00000019800
Monodelphis domestica
ENSMODG00000019800
N
0.773
XM_001377711.1
Monodelphis domestica
ENSMODG00000012002
N
0.800
XP_001110036.1
Macaca mulatta
ENSMMUG00000020845
N
0.787
RBMX2
Macaca mulatta
ENSMMUG00000008389
N
0.787
ENSMMUG00000001001
Macaca mulatta
ENSMMUG00000001001
N
0.707
ENSMLUG00000017095
Myotis lucifugus
ENSMLUG00000017095
N
0.797
ENSMLUG00000010298
Myotis lucifugus
ENSMLUG00000010298
N
0.787
RBMX2
Microcebus murinus
ENSMICG00000015139
N
0.787
RBMX2
Meleagris gallopavo
ENSMGAG00000001801
N
0.747
RBMX2
Macropus eugenii
ENSMEUG00000010913
N
0.773
ENSLAFG00000028277
Loxodonta africana
ENSLAFG00000028277
N
0.824
RBMX2
Loxodonta africana
ENSLAFG00000017625
N
0.779
ENSGGOG00000026106
Gorilla gorilla
ENSGGOG00000026106
N
0.747
RBMX2
Gorilla gorilla
ENSGGOG00000023687
N
0.787
ENSGGOG00000016146
Gorilla gorilla
ENSGGOG00000016146
N
0.773
CAOG_00327
Capsaspora owczarzaki
CAOG_00327
N
0.730