CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM23
(
Sorex araneus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSARG00000005165
T41300_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000004675
RRM
168
235
VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGTYVEFCEIQSVPLAIGLTGQRLLGVPI
ENSSARP00000004675
RRM
264
334
LCVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFADAECARRALEQLNGFELAGRPMK
Links
Other
RRM
family RBPs
Other
Sorex araneus
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM23
Anolis carolinensis
ENSACAG00000001569
N
0.907
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.850
RBM23
Oryctolagus cuniculus
ENSOCUG00000002006
N
0.922
RBM23
Ochotona princeps
ENSOPRG00000001092
N
0.901
RBM39
Ochotona princeps
ENSOPRG00000002183
N
0.850
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.879
ENSPPYG00000005649
Pongo pygmaeus
ENSPPYG00000005649
N
0.957
RBM23
Pan troglodytes
ENSPTRG00000006151
N
0.950
RBM23
Pteropus vampyrus
ENSPVAG00000013785
N
0.950
RBM23
Spermophilus tridecemlineatus
ENSSTOG00000010354
N
0.793
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.879
RBM23
Tarsius syrichta
ENSTSYG00000014755
N
0.800
RBM23
Tursiops truncatus
ENSTTRG00000001500
N
0.957
RBM23
Vicugna pacos
ENSVPAG00000000599
N
0.779
RBM39
Vicugna pacos
ENSVPAG00000003819
N
0.843
rbm23
Xenopus tropicalis
ENSXETG00000022623
N
0.914
BGIBMGA006208
Bombyx mori
BGIBMGA006208
N
0.736
Ame_R014613
Ailuropoda melanoleuca
Ame_R014613
N
0.957
RBM23
Monodelphis domestica
ENSMODG00000024448
N
0.936
LOC710066
Macaca mulatta
ENSMMUG00000018381
N
0.957
RBM23
Myotis lucifugus
ENSMLUG00000012923
N
0.943
Q0IIK8_BOVIN
Bos taurus
ENSBTAG00000038333
N
0.936
RBM23
Canis familiaris
ENSCAFG00000011217
N
0.957
RBM23
Choloepus hoffmanni
ENSCHOG00000004460
N
0.786
RBM23
Callithrix jacchus
ENSCJAG00000008482
N
0.943
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.850
RBM23
Dasypus novemcinctus
ENSDNOG00000002569
N
0.771
ENSDORG00000004926
Dipodomys ordii
ENSDORG00000004926
N
0.950
LOC100052786
Equus caballus
ENSECAG00000009910
N
0.957
RBM39
Erinaceus europaeus
ENSEEUG00000004390
N
0.850
RBM23
Erinaceus europaeus
ENSEEUG00000015560
N
0.943
RBM23
Felis catus
ENSFCAG00000006632
N
0.807
RBM23
Homo sapiens
ENSG00000100461
N
0.957
RBM39
Homo sapiens
ENSG00000131051
N
0.850
RBM23
Gorilla gorilla
ENSGGOG00000015707
N
0.957
RBM23
Loxodonta africana
ENSLAFG00000018567
N
0.921
RBM23
Macropus eugenii
ENSMEUG00000014548
N
0.729
RBM23
Microcebus murinus
ENSMICG00000006364
N
0.950
AAH73374
Xenopus laevis
AAH73374
N
0.893