CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM26796
(
Drosophila sechellia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0181649
T43907_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret_CONSTRUCT
M229_0.6
RNAcompete CONSTRUCTS
UKUGUGU
RNAcompete
Ray et al.(2013)
RNCMPT00270
0.859
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0208273
RRM
80
150
LFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGTKRLK
Links
Other
RRM
family RBPs
Other
Drosophila sechellia
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE010884
Oryza indica
BGIOSIBCE010884
N
0.000
PDK_20s1352821g002
Phoenix dactylifera
PDK_20s1352821g002
N
0.000
Medtr8g134440
Medicago truncatula
Medtr8g134440
N
0.000
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.000
Cucsa.135220
Cucumis sativus
Cucsa.135220
N
0.000
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.000
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.000
29889.m003364
Ricinus communis
29889.m003364
N
0.000
B9HII9_POPTR
Populus trichocarpa
POPTR_0008s09960
N
0.000
LOC_Os03g20180
Oryza sativa
LOC_Os03g20180
N
0.000
BRADI2G12380
Brachypodium distachyon
BRADI2G12380
N
0.000
BRADI1G64100
Brachypodium distachyon
BRADI1G64100
N
0.000
ppa018635m
Prunus persica
ppa018635m
N
0.000