LOC_Os05g36120 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os05g36120 T45050_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g36120.1 RRM 8 66
LOC_Os05g36120.1 RRM 107 172
LOC_Os05g36120.1 RRM 259 325
LOC_Os05g36120.1 RRM 369 435
LOC_Os05g36120.2 RRM 8 66
LOC_Os05g36120.2 RRM 107 172
LOC_Os05g36120.2 RRM 260 316
LOC_Os05g36120.3 RRM 2 62
LOC_Os05g36120.3 RRM 149 215
LOC_Os05g36120.3 RRM 259 325

Links

Other RRM family RBPs
Other Oryza sativa RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK14373.1 Cannabis sativa PK14373.1 N 0.737
cassava19038.valid.m1 Manihot esculenta cassava19038.valid.m1 N 0.727
cassava19039.valid.m1 Manihot esculenta cassava19039.valid.m1 N 0.727
cassava19040.valid.m1 Manihot esculenta cassava19040.valid.m1 N 0.727
Cucsa.365870 Cucumis sativus Cucsa.365870 N 0.735
Glyma02g08870.1 Glycine max Glyma02g08870.1 N 0.708
Glyma10g36770.1 Glycine max Glyma10g36770.1 N 0.700
Glyma20g30820.1 Glycine max Glyma20g30820.1 N 0.712
mgf010164m Mimulus guttatus mgf010164m N 0.721
GRMZM2G052926 Zea mays GRMZM2G052926 N 0.873
GRMZM2G070113 Zea mays GRMZM2G070113 N 0.853
Medtr1g124970 Medicago truncatula Medtr1g124970 N 0.720
Medtr6g041010 Medicago truncatula Medtr6g041010 N 0.727
chr5.CM0052.230.nd Lotus japonicus chr5.CM0052.230.nd N 0.702
PDK_20s1358001g002 Phoenix dactylifera PDK_20s1358001g002 N 0.723
cassava19037.valid.m1 Manihot esculenta cassava19037.valid.m1 N 0.727
cassava16884.m1 Manihot esculenta cassava16884.m1 N 0.736
XM_002893897.1 Arabidopsis lyrata Al_scaffold_0001_3801 N 0.735
PTB3 Arabidopsis thaliana AT1G43190-TAIR-G N 0.735
BGIOSIBCE019174 Oryza indica BGIOSIBCE019174 N 0.885
BRADI2G24150 Brachypodium distachyon BRADI2G24150 N 0.896
BRADI2G56120 Brachypodium distachyon BRADI2G56120 N 0.788
GSVIVG00022282001 Vitis vinifera GSVIVG00022282001 N 0.766
GSVIVG00034558001 Vitis vinifera GSVIVG00034558001 N 0.718
LOC_Os01g64770 Oryza sativa LOC_Os01g64770 N 0.737
B9GT89_POPTR Populus trichocarpa POPTR_0002s06660 N 0.764
B9H7U5_POPTR Populus trichocarpa POPTR_0005s21660 N 0.733
SB09G021560 Sorghum bicolor Sb09g021560 N 0.876
29863.m001059 Ricinus communis 29863.m001059 N 0.719
cassava12742.valid.m1 Manihot esculenta cassava12742.valid.m1 N 0.736
cassava12743.valid.m1 Manihot esculenta cassava12743.valid.m1 N 0.723
ppa005775m Prunus persica ppa005775m N 0.741