estExtDG_fgenesh_newKGs_kg.C_520059 (Emiliania huxleyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExtDG_fgenesh_newKGs_kg.C_520059 T50355_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.741
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.706
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExtDG_fgenesh_newKGs_kg.C_520059 RRM 16 86
estExtDG_fgenesh_newKGs_kg.C_520059 RRM 104 175

Links

Other RRM family RBPs
Other Emiliania huxleyi RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CIMG_00383 Coccidioides immitis CIMG_00383 N 0.000
ATEG_08730 Aspergillus terreus CADATEAG00006712 N 0.000
ANIA_04799 Aspergillus nidulans CADANIAG00005622 N 0.000
AFUA_3G06890 Aspergillus fumigatus CADAFUAG00005682 N 0.000
AFLA_101100 Aspergillus flavus CADAFLAG00011847 N 0.000
ACLA_034850 Aspergillus clavatus CADACLAG00004062 N 0.000
UREG_00439 Uncinocarpus reesii UREG_00439 N 0.000
PABG_00859 Paracoccidioides brasiliensis PABG_00859 N 0.000
HCAG_07243 Histoplasma capsulatum HCAG_07243 N 0.000
CPSG_05134 Coccidioides posadasii CPSG_05134 N 0.000
NFIA_070360 Neosartorya fischeri CADNFIAG00005684 N 0.000