DGIL_AUG5s13542g6t1 (Acyrtosiphon pisum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 DGIL_AUG5s13542g6t1 T31999_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.847
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.839
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.804
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.783
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
DGIL_AUG5s13542g6t1 RRM 7 77
DGIL_AUG5s13542g6t1 RRM 94 165

Links

Other RRM family RBPs
Other Acyrtosiphon pisum RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ISCW010601 Ixodes scapularis ISCW010601 I 0.909
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.888
AAEL013795 Aedes aegypti AAEL013795 I 0.888
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.888
AGAP001538 Anopheles gambiae AGAP001538 I 0.881
GJ15655 Drosophila virilis FBgn0202845 I 0.881
GI16317 Drosophila mojavensis FBgn0139065 I 0.881
GH17589 Drosophila grimshawi FBgn0125059 I 0.881
GG19577 Drosophila erecta FBgn0111779 I 0.874
GE16738 Drosophila yakuba FBgn0234234 I 0.874
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.874
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.874
GF20385 Drosophila ananassae FBgn0097392 I 0.874
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.874
GK19717 Drosophila willistoni FBgn0221715 I 0.874
PHUM263440 Pediculus humanus PHUM263440 I 0.867
99199 Helobdella robusta 99199 I 0.867
GM12470 Drosophila sechellia FBgn0167407 I 0.867
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.867
Spx Drosophila melanogaster FBgn0015818 I 0.867
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.867
GL21313 Drosophila persimilis FBgn0158906 I 0.867
AAH45264 Xenopus laevis AAH45264 I 0.867
AAH77458 Xenopus laevis AAH77458 I 0.867
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.860
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.860
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.860
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.860
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.860
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.860
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.860
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.860
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.860
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.860
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.860
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.860
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.860
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.860
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.860
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.860
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.860
sf3b4 Danio rerio ENSDARG00000018574 D 0.860
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.860
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.860
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.860
SF3B4 Gallus gallus ENSGALG00000013352 I 0.860
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.860
SF3B4 Homo sapiens ENSG00000143368 I 0.860
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.860
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.860
LOC100054350 Equus caballus ENSECAG00000024737 I 0.860
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.860
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.860
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.860
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.860
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.860
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.860
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.860
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.860
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.860
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.860
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.860
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.853
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.853
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.853
Smp_067420 Schistosoma mansoni Smp_067420 D 0.839
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.839
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.832
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.828
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.825
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.825
LOAG_01189 Loa loa LOAG_01189 I 0.825
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.825
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.825
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.818
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.818
Bm1_43460 Brugia malayi Bm1_43460 I 0.818
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.804
CBN06124 Caenorhabditis brenneri CBN06124 I 0.804
sap-49 Caenorhabditis elegans C08B11.5 D 0.804
CRE01639 Caenorhabditis remanei CRE01639 I 0.804
PK08238.1 Cannabis sativa PK08238.1 I 0.790
CBG13349 Caenorhabditis briggsae CBG13349 I 0.790
CJA19238 Caenorhabditis japonica CJA19238 I 0.790
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.790
MDP0000131129 Malus x domestica MDP0000131129 I 0.783
MDP0000320945 Malus x domestica MDP0000320945 I 0.783
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.783
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.783
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.783
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.776
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.776
ppa007508m Prunus persica ppa007508m I 0.776
30183.m001303 Ricinus communis 30183.m001303 I 0.776
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.776
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.776
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.769
SB01G020190 Sorghum bicolor Sb01g020190 I 0.769
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.769
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.769
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.769
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.769
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.762
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.762
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.762
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.762
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.755
Minc12926 Meloidogyne incognita Minc12926 I 0.748
Minc02568 Meloidogyne incognita Minc02568 I 0.748
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.748
Minc01580 Meloidogyne incognita Minc01580 I 0.748
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.741
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.741
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.734
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.734
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.734
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.720
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.720
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.713
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.713
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.706
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.706