estExt_fgenesh2_pg.C_1800064 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_1800064 T50805_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_1800064 RRM 37 107

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000020717 Pongo pygmaeus ENSPPYG00000020717 N 0.778
GF14433 Drosophila ananassae FBgn0091460 N 0.732
GG21207 Drosophila erecta FBgn0113387 N 0.718
GH13830 Drosophila grimshawi FBgn0121306 N 0.718
GI11259 Drosophila mojavensis FBgn0134020 N 0.704
GI11260 Drosophila mojavensis FBgn0134021 N 0.704
GI20215 Drosophila mojavensis FBgn0142951 N 0.704
GL26176 Drosophila persimilis FBgn0163758 N 0.718
GM17378 Drosophila sechellia FBgn0172288 N 0.718
GD24233 Drosophila simulans FBgn0195582 N 0.718
GA10331-RA Drosophila pseudoobscura FBgn0070389 N 0.718
CG10466 Drosophila melanogaster FBgn0032822 N 0.718
XR_023755.1 Pan troglodytes ENSPTRG00000022269 N 0.778
RBMX2 Pteropus vampyrus ENSPVAG00000004425 N 0.806
Rbmx2 Rattus norvegicus ENSRNOG00000007371 N 0.819
RBMX2 Sorex araneus ENSSARG00000007350 N 0.817
RBMX2 Spermophilus tridecemlineatus ENSSTOG00000015391 N 0.833
RBMX2 Tetraodon nigroviridis ENSTNIG00000007672 N 0.803
RBMX2 Takifugu rubripes ENSTRUG00000001699 N 0.817
RBMX2 Tarsius syrichta ENSTSYG00000010611 N 0.718
RBMX2 Tursiops truncatus ENSTTRG00000016210 N 0.806
GJ13600 Drosophila virilis FBgn0200822 N 0.718
GK14925 Drosophila willistoni FBgn0216930 N 0.746
GE13281 Drosophila yakuba FBgn0230967 N 0.718
gw1.1.945.1 Micromonas pusilla gw1.1.945.1 N 0.704
gw.130.169.1 Nematostella vectensis gw.130.169.1 N 0.732
gw1.462.53.1 Capitella teleta gw1.462.53.1 N 0.761
gw.2725.1.1 Branchiostoma floridae gw.2725.1.1 N 0.732
Sjc_0109550 Schistosoma japonicum Sjc_0109550 N 0.716
Ame_R006638 Ailuropoda melanoleuca Ame_R006638 N 0.806
Smp_170230 Schistosoma mansoni Smp_170230 N 0.716
XP_001180915.1 Strongylocentrotus purpuratus XP_001180915.1 N 0.789
XP_002164481.1 Hydra magnipapillata XP_002164481.1 N 0.789
fgenesh2_pg.C_sca_10000115 Lottia gigantea fgenesh2_pg.C_sca_10000115 N 0.789
estExt_Genewise1Plus.C_10678 Schizophyllum commune estExt_Genewise1Plus.C_10678 N 0.704
PHUM617480 Pediculus humanus PHUM617480 N 0.761
145168 Helobdella robusta 145168 N 0.718
Aqu1.200557 Amphimedon queenslandica Aqu1.200557 N 0.775
Aqu1.228439 Amphimedon queenslandica Aqu1.228439 N 0.775
e_gw1.98.15.1 Volvox carteri e_gw1.98.15.1 N 0.732
estExtDG_fgenesh_newKGs_kg.C_2300001 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_2300001 N 0.746
estExtDG_fgenesh_newKGs_kg.C_80246 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_80246 N 0.746
estExtDG_Genewise1.C_160043 Emiliania huxleyi estExtDG_Genewise1.C_160043 N 0.746
estExt_fgenesh1_pg.C_30395 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_30395 N 0.704
XP_791635.2 Strongylocentrotus purpuratus XP_791635.2 N 0.789
RBMX2 Procavia capensis ENSPCAG00000012903 N 0.764
Bm1_02690 Brugia malayi Bm1_02690 N 0.704
RBMX2 Canis familiaris ENSCAFG00000018770 N 0.784
LOC100388331 Callithrix jacchus ENSCJAG00000002436 N 0.806
RBMX2 Cavia porcellus ENSCPOG00000006640 N 0.819
ENSCSAVG00000001047 Ciona savignyi ENSCSAVG00000001047 N 0.775
rbmx2 Danio rerio ENSDARG00000044380 N 0.817
LOC100058600 Equus caballus ENSECAG00000008257 N 0.806
RBMX2 Erinaceus europaeus ENSEEUG00000000839 N 0.792
RBMX2 Echinops telfairi ENSETEG00000001763 N 0.806
RBMX2 Homo sapiens ENSG00000134597 N 0.806
LOC613705 Bos taurus ENSBTAG00000014771 N 0.746
LOC534630 Bos taurus ENSBTAG00000006252 N 0.775
CAOG_00327 Capsaspora owczarzaki CAOG_00327 N 0.746
CpipJ_CPIJ015641 Culex pipiens CpipJ_CPIJ015641 N 0.716
SPRG_07125 Saprolegnia parasitica SPRG_07125 N 0.704
WUBG_13107 Wuchereria bancrofti WUBG_13107 N 0.704
nasonia_NCBI_hmm382923 Nasonia vitripennis nasonia_NCBI_hmm382923 N 0.761
AAEL002461 Aedes aegypti AAEL002461 N 0.775
AGAP000977 Anopheles gambiae AGAP000977 N 0.803
CPIJ015641 Culex quinquefasciatus CPIJ015641 N 0.716
RBMX2 Anolis carolinensis ENSACAG00000008819 N 0.847
RBMX2 Gasterosteus aculeatus ENSGACG00000001855 N 0.817
RBMX2 Gallus gallus ENSGALG00000004025 N 0.819
ENSGGOG00000016146 Gorilla gorilla ENSGGOG00000016146 N 0.792
XP_001110036.1 Macaca mulatta ENSMMUG00000020845 N 0.792
XM_001377711.1 Monodelphis domestica ENSMODG00000012002 N 0.819
ENSMODG00000019800 Monodelphis domestica ENSMODG00000019800 N 0.792
Rbmx2 Mus musculus ENSMUSG00000031107 N 0.833
RBMX2 Ornithorhynchus anatinus ENSOANG00000001362 N 0.797
RBMX2 Oryctolagus cuniculus ENSOCUG00000011809 N 0.795
ENSOCUG00000020937 Oryctolagus cuniculus ENSOCUG00000020937 N 0.811
ENSOGAG00000006237 Otolemur garnettii ENSOGAG00000006237 N 0.806
ENSOGAG00000009060 Otolemur garnettii ENSOGAG00000009060 N 0.764
RBMX2 Macaca mulatta ENSMMUG00000008389 N 0.806
ENSMMUG00000001001 Macaca mulatta ENSMMUG00000001001 N 0.722
RBMX2 Gorilla gorilla ENSGGOG00000023687 N 0.806
ENSGGOG00000026106 Gorilla gorilla ENSGGOG00000026106 N 0.764
RBMX2 Loxodonta africana ENSLAFG00000017625 N 0.797
ENSLAFG00000028277 Loxodonta africana ENSLAFG00000028277 N 0.845
RBMX2 Macropus eugenii ENSMEUG00000010913 N 0.792
RBMX2 Meleagris gallopavo ENSMGAG00000001801 N 0.792
RBMX2 Microcebus murinus ENSMICG00000015139 N 0.806
ENSMLUG00000010298 Myotis lucifugus ENSMLUG00000010298 N 0.806
ENSMLUG00000017095 Myotis lucifugus ENSMLUG00000017095 N 0.817
RBMX2 Oryzias latipes ENSORLG00000013183 N 0.845