Medtr5g029540 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr5g029540 T54539_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr5g029540.1 RRM 6 71

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK05006.1 Cannabis sativa PK05006.1 N 0.821
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.791
cassava28770.m1 Manihot esculenta cassava28770.m1 N 0.712
Cucsa.322000 Cucumis sativus Cucsa.322000 N 0.794
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.783
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.768
mgf007506m Mimulus guttatus mgf007506m N 0.833
mgf014593m Mimulus guttatus mgf014593m N 0.776
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.776
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.776
GRMZM2G114789 Zea mays GRMZM2G114789 N 0.701
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.791
MDP0000177505 Malus x domestica MDP0000177505 N 0.731
MDP0000596287 Malus x domestica MDP0000596287 N 0.791
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.776
PDK_20s1373891g001 Phoenix dactylifera PDK_20s1373891g001 N 0.710
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.776
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.779
30073.m002271 Ricinus communis 30073.m002271 N 0.821
29682.m000595 Ricinus communis 29682.m000595 N 0.848
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.731
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.750
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.731
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.725
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.776
BRADI1G10760 Brachypodium distachyon BRADI1G10760 N 0.725
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.791
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.750
GSVIVG00011624001 Vitis vinifera GSVIVG00011624001 N 0.716
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.791
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.791
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.725
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.776
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.833
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.761
SB10G000940 Sorghum bicolor Sb10g000940 N 0.776
ppa024222m Prunus persica ppa024222m N 0.701