CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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zrsr2
(
Danio rerio
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSDARG00000058448
T00481_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000075762
CCCH ZF
161
187
KDKANCPFFLKTGACRFGDRCSRKHDH
ENSDARP00000075762
RRM
235
292
EDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGRWYAGRQLQ
ENSDARP00000075762
CCCH ZF
301
326
WKTAICGLFDRRKCPKGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Danio rerio
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE005715
Oryza indica
BGIOSIBCE005715
N
0.000
BGIOSIBCE023057
Oryza indica
BGIOSIBCE023057
N
0.000
BRADI3G04650
Brachypodium distachyon
BRADI3G04650
N
0.000
GRMZM2G119640
Zea mays
GRMZM2G119640
N
0.000
LOC_Os02g06584
Oryza sativa
LOC_Os02g06584
N
0.000
SB04G004243
Sorghum bicolor
Sb04g004243
N
0.000