ZFP36L1 (Cavia porcellus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSCPOG00000025078 T02417_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.722
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.722
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.722
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.722
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.722
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.722
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.722
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015513 CCCH ZF 115 141
ENSCPOP00000015513 CCCH ZF 153 179

Links

Other CCCH ZF family RBPs
Other Cavia porcellus RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0300010273 Ostreococcus tauri 0300010273 I 0.704
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 1.000
AAD24208 Xenopus laevis AAD24208 I 0.981
AAD24209 Xenopus laevis AAD24209 I 0.963
AAH44086 Xenopus laevis AAH44086 I 0.944
AAH84197 Xenopus laevis AAH84197 I 0.981
AAH84221 Xenopus laevis AAH84221 I 0.963
AAI00163 Xenopus laevis AAI00163 I 0.981
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.741
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.741
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.926
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.926
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 1.000
BAC54909 Xenopus laevis BAC54909 I 0.963
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.704
CMA121C Cyanidioschyzon merolae CMA121C N 0.000
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.704
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.722
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 1.000
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 1.000
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.926
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.926
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.704
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.704
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.704
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.944
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.704
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.704
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.944
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.000
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.704
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.704
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.704
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.000
fgeneshNG_pg.scaffold_32000024 Naegleria gruberi fgeneshNG_pg.scaffold_32000024 N 0.000
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.722
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.722
gw1.57.55.1 Melampsora laricis populina gw1.57.55.1 N 0.000
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.000
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.704
LOC100063597 Equus caballus ENSECAG00000018860 I 1.000
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.926
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 1.000
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.889
PTTG_07763 Puccinia triticina PTTG_07763 N 0.000
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.926
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.944
Q805B4 Xenopus laevis Q805B4 I 0.963
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.000
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 1.000
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.926
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.926
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.926
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.926
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 1.000
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 1.000
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 1.000
Zfp36l1 Mus musculus ENSMUSG00000021127 I 1.000
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 1.000
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 1.000
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.981
ZFP36L1 Homo sapiens ENSG00000185650 I 1.000
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 1.000
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 1.000
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 1.000
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.981
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 1.000
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.963
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 1.000
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.981
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 1.000
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 1.000
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.963
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 1.000
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.981
zfp36l1a Danio rerio ENSDARG00000016154 I 1.000
zfp36l1b Danio rerio ENSDARG00000021443 I 0.926
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.926
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.926
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.944
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.926
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.926
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.926
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.944
zfp36l2 Danio rerio ENSDARG00000021806 I 0.926
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.926
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.926
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.963
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.944
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.926
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.926
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.926
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.926
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.926
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.926
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.907
ZFP36L2 Homo sapiens ENSG00000152518 I 0.926
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.926