fgenesh1_pg.C_scaffold_30000016 (Phytophthora ramorum)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pg.C_scaffold_30000016 T05223_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_30000016 CCCH ZF 38 64
fgenesh1_pg.C_scaffold_30000016 CCCH ZF 76 102

Links

Other CCCH ZF family RBPs
Other Phytophthora ramorum RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_019550 Aspergillus clavatus CADACLAG00002508 N 0.000
AFLA_083600 Aspergillus flavus CADAFLAG00001140 N 0.000
AFUA_1G15810 Aspergillus fumigatus CADAFUAG00006904 N 0.000
An01g14180 Aspergillus niger CADANGAG00001415 N 0.000
ANIA_00917 Aspergillus nidulans CADANIAG00001739 N 0.000
AO090005001118 Aspergillus oryzae CADAORAG00003032 N 0.000
ARB_02131 Arthroderma benhamiae ARB_02131 N 0.000
ATEG_05213 Aspergillus terreus CADATEAG00005232 N 0.000
BC1G_00662 Botrytis cinerea BC1G_00662 N 0.000
BDBG_07521 Blastomyces dermatitidis BDBG_07521 N 0.000
CHGG_08209 Chaetomium globosum CHGG_08209 N 0.000
CIMG_03100 Coccidioides immitis CIMG_03100 N 0.000
CPSG_04315 Coccidioides posadasii CPSG_04315 N 0.000
estExt_fgenesh1_pm.C_20497 Cryphonectria parasitica estExt_fgenesh1_pm.C_20497 N 0.000
estExt_fgenesh2_pm.C_60094 Thielavia terrestris estExt_fgenesh2_pm.C_60094 N 0.000
estExt_fgenesh5_pg.C_10453 Trichoderma reesei estExt_fgenesh5_pg.C_10453 N 0.000
estExt_Genewise1Plus.C_100357 Neurospora tetrasperma estExt_Genewise1Plus.C_100357 N 0.000
estExt_Genewise1Plus.C_160212 Neurospora discreta estExt_Genewise1Plus.C_160212 N 0.000
estExt_Genewise1Plus.C_20716 Trichoderma virens estExt_Genewise1Plus.C_20716 N 0.000
estExt_Genewise1Plus.C_320091 Mycosphaerella fijiensis estExt_Genewise1Plus.C_320091 N 0.000
estExt_Genewise1Plus.C_sca_3_chr4_2_00461 Nectria haematococca estExt_Genewise1Plus.C_sca_3_chr4_2_00461 N 0.000
e_gw1.00042.124.1 Aspergillus carbonarius e_gw1.00042.124.1 N 0.000
e_gw1.12.188.1 Trichoderma atroviride e_gw1.12.188.1 N 0.000
FGSG_05165 Fusarium graminearum FGSG_05165 N 0.000
FOXG_07909 Fusarium oxysporum FOXG_07909 N 0.000
FVEG_04832 Fusarium verticillioides FVEG_04832 N 0.000
GLRG_08678 Colletotrichum graminicola GLRG_08678 N 0.000
GSTUMT00004251001 Tuber melanosporum GSTUMT00004251001 N 0.000
HCAG_02257 Histoplasma capsulatum HCAG_02257 N 0.000
MCYG_00053 Microsporum canis MCYG_00053 N 0.000
MGG_12101 Magnaporthe oryzae MGG_12101 N 0.000
MGYG_07158 Microsporum gypseum MGYG_07158 N 0.000
NFIA_009510 Neosartorya fischeri CADNFIAG00001864 N 0.000
PABG_06048 Paracoccidioides brasiliensis PABG_06048 N 0.000
Pad-1 Neurospora crassa NCU03491 N 0.000
Pa_6_4410 Podospora anserina Pa_6_4410 N 0.000
Pc16g14480 Penicillium chrysogenum Pc16g14480 N 0.000
PMAA_065980 Penicillium marneffei PMAA_065980 N 0.000
SS1G_00444 Sclerotinia sclerotiorum SS1G_00444 N 0.000
TEQG_08002 Trichophyton equinum TEQG_08002 N 0.000
TERG_08096 Trichophyton rubrum TERG_08096 N 0.000
TESG_03203 Trichophyton tonsurans TESG_03203 N 0.000
TRV_02070 Trichophyton verrucosum TRV_02070 N 0.000
UREG_02855 Uncinocarpus reesii UREG_02855 N 0.000
VDAG_07019 Verticillium dahliae VDAG_07019 N 0.000