XP_001194015.1 (Strongylocentrotus purpuratus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 XP_001194015.1 T06615_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.785
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.785
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_001194015.1 CCCH ZF 11 34
XP_001194015.1 CCCH ZF 52 67
XP_001194015.1 CCCH ZF 202 228
XP_001194015.1 CCCH ZF 240 262

Links

Other CCCH ZF family RBPs
Other Strongylocentrotus purpuratus RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A3F958_CHICK Gallus gallus ENSGALG00000016890 I 0.804
A5HMN7_CHICK Gallus gallus ENSGALG00000006066 I 0.806
A5PKK4_BOVIN Bos taurus ENSBTAG00000018313 I 0.785
Ame_R002664 Ailuropoda melanoleuca Ame_R002664 I 0.793
Ame_R011226 Ailuropoda melanoleuca Ame_R011226 I 0.731
ENSGACG00000004222 Gasterosteus aculeatus ENSGACG00000004222 I 0.793
ENSGACG00000015105 Gasterosteus aculeatus ENSGACG00000015105 I 0.793
ENSORLG00000005419 Oryzias latipes ENSORLG00000005419 I 0.804
ENSPPYG00000005456 Pongo pygmaeus ENSPPYG00000005456 I 0.793
ENSPPYG00000014218 Pongo pygmaeus ENSPPYG00000014218 I 0.785
ENSPPYG00000020726 Pongo pygmaeus ENSPPYG00000020726 I 0.774
ENSTNIG00000013977 Tetraodon nigroviridis ENSTNIG00000013977 I 0.772
ENSTRUG00000017351 Takifugu rubripes ENSTRUG00000017351 I 0.763
LOC100050018 Equus caballus ENSECAG00000024349 I 0.785
LOC100054316 Equus caballus ENSECAG00000021076 I 0.763
LOC100392264 Callithrix jacchus ENSCJAG00000001054 I 0.785
LOC100397507 Callithrix jacchus ENSCJAG00000004080 I 0.774
LOC100403733 Callithrix jacchus ENSCJAG00000004294 I 0.793
MBN2A_FUGRU Takifugu rubripes ENSTRUG00000010220 I 0.804
MBNL1 Tetraodon nigroviridis ENSTNIG00000003878 I 0.796
Mbnl1 Mus musculus ENSMUSG00000027763 I 0.785
MBNL1 Vicugna pacos ENSVPAG00000006162 I 0.785
MBNL1 Oryzias latipes ENSORLG00000015858 I 0.806
mbnl1 Xenopus tropicalis ENSXETG00000021655 I 0.796
MBNL1 Monodelphis domestica ENSMODG00000015838 I 0.785
MBNL1 Macaca mulatta ENSMMUG00000015910 I 0.785
MBNL1 Myotis lucifugus ENSMLUG00000014029 I 0.785
MBNL1 Macropus eugenii ENSMEUG00000006617 I 0.753
MBNL1 Tursiops truncatus ENSTTRG00000009991 I 0.785
MBNL1 Oryctolagus cuniculus ENSOCUG00000007601 I 0.785
MBNL1 Ochotona princeps ENSOPRG00000009633 I 0.785
MBNL1 Taeniopygia guttata ENSTGUG00000011341 I 0.785
MBNL1 Spermophilus tridecemlineatus ENSSTOG00000009457 I 0.785
MBNL1 Takifugu rubripes ENSTRUG00000001892 I 0.774
MBNL1 Pteropus vampyrus ENSPVAG00000002760 I 0.785
MBNL1 Pan troglodytes ENSPTRG00000015542 I 0.785
MBNL1 Oryzias latipes ENSORLG00000005925 I 0.785
MBNL1 Takifugu rubripes ENSTRUG00000013858 I 0.796
MBNL1 Tarsius syrichta ENSTSYG00000010491 I 0.785
MBNL1 Loxodonta africana ENSLAFG00000017683 I 0.785
MBNL1 Gorilla gorilla ENSGGOG00000009430 I 0.785
MBNL1 Gasterosteus aculeatus ENSGACG00000015003 I 0.817
MBNL1 Erinaceus europaeus ENSEEUG00000009449 I 0.785
MBNL1 Gasterosteus aculeatus ENSGACG00000010253 I 0.763
MBNL1 Canis familiaris ENSCAFG00000008603 I 0.785
MBNL1 Cavia porcellus ENSCPOG00000011516 I 0.785
MBNL1 Dasypus novemcinctus ENSDNOG00000012815 I 0.785
MBNL1 Homo sapiens ENSG00000152601 D 0.785
MBNL1 Anolis carolinensis ENSACAG00000008014 I 0.785
MBNL1_CHICK Gallus gallus ENSGALG00000010361 I 0.785
MBNL2 Spermophilus tridecemlineatus ENSSTOG00000013149 I 0.793
MBNL2 Echinops telfairi ENSETEG00000003784 I 0.793
MBNL2 Taeniopygia guttata ENSTGUG00000011104 I 0.804
MBNL2 Procavia capensis ENSPCAG00000005151 I 0.793
Mbnl2 Mus musculus ENSMUSG00000022139 I 0.783
MBNL2 Homo sapiens ENSG00000139793 I 0.793
mbnl2 Danio rerio ENSDARG00000018460 I 0.804
MBNL2 Pan troglodytes ENSPTRG00000005982 I 0.793
MBNL2 Erinaceus europaeus ENSEEUG00000006209 I 0.772
MBNL2 Choloepus hoffmanni ENSCHOG00000000049 I 0.783
MBNL2 Cavia porcellus ENSCPOG00000010320 I 0.793
Mbnl2 Rattus norvegicus ENSRNOG00000010737 I 0.783
MBNL2 Sorex araneus ENSSARG00000002868 I 0.793
MBNL2 Tupaia belangeri ENSTBEG00000005178 I 0.750
MBNL2 Sus scrofa ENSSSCG00000009505 I 0.793
MBNL2 Pteropus vampyrus ENSPVAG00000003263 I 0.793
MBNL2 Anolis carolinensis ENSACAG00000000969 I 0.804
MBNL2 Canis familiaris ENSCAFG00000005523 I 0.793
MBNL2 Gorilla gorilla ENSGGOG00000008349 I 0.793
MBNL2 Loxodonta africana ENSLAFG00000014497 I 0.793
MBNL2 Myotis lucifugus ENSMLUG00000010920 I 0.728
MBNL2 Monodelphis domestica ENSMODG00000008566 I 0.793
MBNL2 Meleagris gallopavo ENSMGAG00000014904 I 0.804
MBNL2 Tursiops truncatus ENSTTRG00000008491 I 0.793
MBNL2 Ornithorhynchus anatinus ENSOANG00000014911 I 0.793
MBNL2 Oryctolagus cuniculus ENSOCUG00000000220 I 0.793
MBNL2 Macropus eugenii ENSMEUG00000016143 I 0.750
MBNL2 Tarsius syrichta ENSTSYG00000004574 I 0.783
MBNL2 Ochotona princeps ENSOPRG00000007427 I 0.793
MBNL2 Vicugna pacos ENSVPAG00000010696 I 0.793
mbnl3 Danio rerio ENSDARG00000016085 I 0.761
MBNL3 Anolis carolinensis ENSACAG00000009557 I 0.796
MBNL3 Tetraodon nigroviridis ENSTNIG00000016812 I 0.793
mbnl3 Xenopus tropicalis ENSXETG00000005409 I 0.806
MBNL3 Vicugna pacos ENSVPAG00000004743 I 0.763
MBNL3 Tursiops truncatus ENSTTRG00000016841 I 0.753
MBNL3 Bos taurus ENSBTAG00000014088 I 0.763
MBNL3 Canis familiaris ENSCAFG00000018841 I 0.763
MBNL3 Spermophilus tridecemlineatus ENSSTOG00000006715 I 0.774
MBNL3 Taeniopygia guttata ENSTGUG00000002999 I 0.806
MBNL3 Gasterosteus aculeatus ENSGACG00000017015 I 0.783
MBNL3 Gorilla gorilla ENSGGOG00000007756 I 0.774
MBNL3 Monodelphis domestica ENSMODG00000015304 I 0.806
MBNL3 Macaca mulatta ENSMMUG00000003071 I 0.774
MBNL3 Myotis lucifugus ENSMLUG00000016240 I 0.763
MBNL3 Microcebus murinus ENSMICG00000017340 I 0.720
MBNL3 Meleagris gallopavo ENSMGAG00000003064 I 0.806
MBNL3 Loxodonta africana ENSLAFG00000011822 I 0.774
Mbnl3 Mus musculus ENSMUSG00000036109 I 0.774
MBNL3 Ornithorhynchus anatinus ENSOANG00000011697 I 0.806
MBNL3 Oryctolagus cuniculus ENSOCUG00000014979 I 0.763
MBNL3 Dasypus novemcinctus ENSDNOG00000016518 I 0.774
MBNL3 Sorex araneus ENSSARG00000006397 I 0.763
Mbnl3 Rattus norvegicus ENSRNOG00000002487 I 0.732
MBNL3 Pteropus vampyrus ENSPVAG00000006115 I 0.731
Mbnl3 Dipodomys ordii ENSDORG00000012854 I 0.763
MBNL3 Homo sapiens ENSG00000076770 I 0.774
MBNL3 Oryzias latipes ENSORLG00000002183 I 0.761
MBNL3 Macropus eugenii ENSMEUG00000001183 I 0.806
MBNL3_FUGRU Takifugu rubripes ENSTRUG00000012666 I 0.793