CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_001194015.1
(
Strongylocentrotus purpuratus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
XP_001194015.1
T06615_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.785
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.785
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_001194015.1
CCCH ZF
11
34
IEACREFQRGTCKRSDAECKYAHP
XP_001194015.1
CCCH ZF
52
67
LKGRCTRENCKYLHPP
XP_001194015.1
CCCH ZF
202
228
DKLEVCREYQRGSCSRGETECKFAHPD
XP_001194015.1
CCCH ZF
240
262
VTVCMDHVKGRCSREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Strongylocentrotus purpuratus
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A7MB26_BOVIN
Bos taurus
ENSBTAG00000017164
N
0.000
AAI24888
Xenopus laevis
AAI24888
N
0.000
AAI30197
Xenopus laevis
AAI30197
N
0.000
Ame_R010643
Ailuropoda melanoleuca
Ame_R010643
N
0.000
ENSCPOG00000020519
Cavia porcellus
ENSCPOG00000020519
N
0.000
ENSOCUG00000021417
Oryctolagus cuniculus
ENSOCUG00000021417
N
0.000
ENSOCUG00000026872
Oryctolagus cuniculus
ENSOCUG00000026872
N
0.000
ENSPPYG00000004512
Pongo pygmaeus
ENSPPYG00000004512
N
0.000
ENSPPYG00000006330
Pongo pygmaeus
ENSPPYG00000006330
N
0.000
LARP4
Oryzias latipes
ENSORLG00000006758
N
0.000
LARP4
Procavia capensis
ENSPCAG00000003671
N
0.000
LARP4
Pteropus vampyrus
ENSPVAG00000016840
N
0.000
LARP4
Sorex araneus
ENSSARG00000012469
N
0.000
LARP4
Oryzias latipes
ENSORLG00000018835
N
0.000
LARP4
Tupaia belangeri
ENSTBEG00000005167
N
0.000
LARP4
Tetraodon nigroviridis
ENSTNIG00000015109
N
0.000
LARP4
Takifugu rubripes
ENSTRUG00000007206
N
0.000
LARP4
Takifugu rubripes
ENSTRUG00000015939
N
0.000
LARP4
Tarsius syrichta
ENSTSYG00000004342
N
0.000
LARP4
Tursiops truncatus
ENSTTRG00000003764
N
0.000
LARP4
Vicugna pacos
ENSVPAG00000010136
N
0.000
larp4
Xenopus tropicalis
ENSXETG00000007283
N
0.000
LARP4
Taeniopygia guttata
ENSTGUG00000003479
N
0.000
LARP4
Ochotona princeps
ENSOPRG00000004592
N
0.000
LARP4
Anolis carolinensis
ENSACAG00000017133
N
0.000
LARP4
Gasterosteus aculeatus
ENSGACG00000008381
N
0.000
LARP4
Gasterosteus aculeatus
ENSGACG00000000680
N
0.000
LARP4
Homo sapiens
ENSG00000161813
N
0.000
LARP4
Equus caballus
ENSECAG00000012479
N
0.000
LARP4
Dasypus novemcinctus
ENSDNOG00000018540
N
0.000
LARP4
Danio rerio
ENSDARG00000074979
N
0.000
LARP4
Callithrix jacchus
ENSCJAG00000021131
N
0.000
LARP4
Choloepus hoffmanni
ENSCHOG00000010490
N
0.000
LARP4
Canis familiaris
ENSCAFG00000008174
N
0.000
LARP4
Gorilla gorilla
ENSGGOG00000015230
N
0.000
LARP4
Loxodonta africana
ENSLAFG00000005160
N
0.000
LARP4
Meleagris gallopavo
ENSMGAG00000010598
N
0.000
LARP4
Ornithorhynchus anatinus
ENSOANG00000004373
N
0.000
LARP4
Myotis lucifugus
ENSMLUG00000012513
N
0.000
Larp4
Mus musculus
ENSMUSG00000023025
N
0.000
LARP4
Monodelphis domestica
ENSMODG00000004844
N
0.000
larp4a
Danio rerio
ENSDARG00000078401
N
0.000
LOC683071
Rattus norvegicus
ENSRNOG00000042017
N
0.000
LOC693337
Macaca mulatta
ENSMMUG00000008172
N
0.000
Q5F449_CHICK
Gallus gallus
ENSGALG00000006163
N
0.000
XR_019868.1
Pan troglodytes
ENSPTRG00000004935
N
0.000