LIN28A (Takifugu rubripes)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSTRUG00000006069 T06839_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.899
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.899
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000014746 CSD 40 112
ENSTRUP00000014746 CCHC ZF 137 154
ENSTRUP00000014746 CCHC ZF 159 176
ENSTRUP00000014747 CSD 39 111
ENSTRUP00000014747 CCHC ZF 136 153
ENSTRUP00000014747 CCHC ZF 158 175

Links

Other CCHC ZF,CSD family RBPs
Other Takifugu rubripes RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH42225 Xenopus laevis AAH42225 I 0.826
AAI69597 Xenopus laevis AAI69597 I 0.836
AAI69625 Xenopus laevis AAI69625 I 0.836
AAM77750 Xenopus laevis AAM77750 I 0.836
Ame_R001082 Ailuropoda melanoleuca Ame_R001082 I 0.899
Ame_R004947 Ailuropoda melanoleuca Ame_R004947 I 0.855
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.890
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.899
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.899
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.862
ENSPPYG00000001684 Pongo pygmaeus ENSPPYG00000001684 I 0.899
ENSPPYG00000016875 Pongo pygmaeus ENSPPYG00000016875 I 0.855
Lin28 Rattus norvegicus ENSRNOG00000015384 I 0.899
LIN28 Equus caballus ENSECAG00000020267 I 0.899
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.899
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.882
LIN28A Myotis lucifugus ENSMLUG00000010158 I 0.899
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.899
Lin28a Mus musculus ENSMUSG00000050966 I 0.899
lin28a Xenopus tropicalis ENSXETG00000012324 I 0.864
LIN28A Takifugu rubripes ENSTRUG00000009454 I 0.764
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.899
LIN28A Oryzias latipes ENSORLG00000014369 I 0.927
LIN28A Procavia capensis ENSPCAG00000013674 I 0.844
LIN28A Tetraodon nigroviridis ENSTNIG00000009802 I 0.764
LIN28A Sus scrofa ENSSSCG00000003557 I 0.890
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.899
LIN28A Macropus eugenii ENSMEUG00000008743 I 0.899
LIN28A Gasterosteus aculeatus ENSGACG00000013893 I 0.909
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.872
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.899
LIN28A Homo sapiens ENSG00000131914 D 0.899
lin28a Danio rerio ENSDARG00000016999 I 0.845
LIN28A Gasterosteus aculeatus ENSGACG00000007826 I 0.827
LIN28A Danio rerio ENSDARG00000004328 I 0.881
LIN28A Canis familiaris ENSCAFG00000012488 I 0.899
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.899
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.899
LIN28A Felis catus ENSFCAG00000012810 I 0.899
LIN28A Bos taurus ENSBTAG00000040497 I 0.899
LIN28B Sorex araneus ENSSARG00000008374 I 0.855
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.836
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.836
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.855
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.845
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.826
LIN28B Canis familiaris ENSCAFG00000003598 I 0.845
LIN28B Tarsius syrichta ENSTSYG00000006480 I 0.845
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.835
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.845
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.855
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.855
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.855
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.855
Lin28b Mus musculus ENSMUSG00000063804 I 0.836
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.855
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.826
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.818
LIN28B Homo sapiens ENSG00000187772 I 0.855
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.855
LIN28B Oryzias latipes ENSORLG00000012891 I 0.817
LIN28B Echinops telfairi ENSETEG00000015340 I 0.836
LIN28B Microcebus murinus ENSMICG00000002297 I 0.855
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.826
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.836
LN28A_CHICK Gallus gallus ENSGALG00000000388 I 0.882
LN28B_CHICK Gallus gallus ENSGALG00000015411 I 0.835
LOC100066260 Equus caballus ENSECAG00000020994 I 0.845
LOC100400137 Callithrix jacchus ENSCJAG00000001671 I 0.855
LOC100405014 Callithrix jacchus ENSCJAG00000009796 I 0.899
LOC100406610 Callithrix jacchus ENSCJAG00000021979 I 0.809
Q8AVK2 Xenopus laevis Q8AVK2 I 0.826
Q8JHC4 Xenopus laevis Q8JHC4 I 0.836
XR_023903.1 Pan troglodytes ENSPTRG00000000384 I 0.890