GA16823-RA (Drosophila pseudoobscura)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 FBgn0076837 T10621_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0277878 CCHC ZF 152 167

Links

Other CCHC ZF family RBPs
Other Drosophila pseudoobscura RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
174274 Helobdella robusta 174274 N 0.000
184477 Helobdella robusta 184477 N 0.000
29889.m003353 Ricinus communis 29889.m003353 N 0.000
B9HIJ8_POPTR Populus trichocarpa POPTR_0008s10060 N 0.000
BGIOSIBCE036979 Oryza indica BGIOSIBCE036979 N 0.000
BRADI4G04650 Brachypodium distachyon BRADI4G04650 N 0.000
cassava22294.valid.m1 Manihot esculenta cassava22294.valid.m1 N 0.000
emb1441 Arabidopsis thaliana AT5G49930-TAIR-G N 0.000
estExt_fgenesh1_pg.C_5350001 Physcomitrella patens estExt_fgenesh1_pg.C_5350001 N 0.000
e_gw1.117.3.1 Physcomitrella patens e_gw1.117.3.1 N 0.000
Glyma09g03670.1 Glycine max Glyma09g03670.1 N 0.000
Glyma11g10610.1 Glycine max Glyma11g10610.1 N 0.000
Glyma15g14560.1 Glycine max Glyma15g14560.1 N 0.000
GRMZM2G038516 Zea mays GRMZM2G038516 N 0.000
GRMZM2G063544 Zea mays GRMZM2G063544 N 0.000
GSVIVG00034941001 Vitis vinifera GSVIVG00034941001 N 0.000
LjSGA_011995.1 Lotus japonicus LjSGA_011995.1 N 0.000
LOC_Os01g22300 Oryza sativa LOC_Os01g22300 N 0.000
LOC_Os01g23160 Oryza sativa LOC_Os01g23160 N 0.000
LOC_Os01g35360 Oryza sativa LOC_Os01g35360 N 0.000
LOC_Os01g35540 Oryza sativa LOC_Os01g35540 N 0.000
LOC_Os01g38010 Oryza sativa LOC_Os01g38010 N 0.000
LOC_Os01g47220 Oryza sativa LOC_Os01g47220 N 0.000
LOC_Os02g20080 Oryza sativa LOC_Os02g20080 N 0.000
LOC_Os04g05140 Oryza sativa LOC_Os04g05140 N 0.000
LOC_Os04g05270 Oryza sativa LOC_Os04g05270 N 0.000
LOC_Os04g06660 Oryza sativa LOC_Os04g06660 N 0.000
LOC_Os04g13330 Oryza sativa LOC_Os04g13330 N 0.000
LOC_Os04g19040 Oryza sativa LOC_Os04g19040 N 0.000
LOC_Os04g24998 Oryza sativa LOC_Os04g24998 N 0.000
LOC_Os04g38150 Oryza sativa LOC_Os04g38150 N 0.000
LOC_Os04g50140 Oryza sativa LOC_Os04g50140 N 0.000
LOC_Os05g16880 Oryza sativa LOC_Os05g16880 N 0.000
LOC_Os05g17450 Oryza sativa LOC_Os05g17450 N 0.000
LOC_Os05g17500 Oryza sativa LOC_Os05g17500 N 0.000
LOC_Os05g19810 Oryza sativa LOC_Os05g19810 N 0.000
LOC_Os05g19890 Oryza sativa LOC_Os05g19890 N 0.000
LOC_Os05g20690 Oryza sativa LOC_Os05g20690 N 0.000
LOC_Os06g03280 Oryza sativa LOC_Os06g03280 N 0.000
LOC_Os06g15070 Oryza sativa LOC_Os06g15070 N 0.000
LOC_Os06g15530 Oryza sativa LOC_Os06g15530 N 0.000
LOC_Os06g15950 Oryza sativa LOC_Os06g15950 N 0.000
LOC_Os06g36620 Oryza sativa LOC_Os06g36620 N 0.000
LOC_Os06g48410 Oryza sativa LOC_Os06g48410 N 0.000
LOC_Os06g48420 Oryza sativa LOC_Os06g48420 N 0.000
LOC_Os07g34480 Oryza sativa LOC_Os07g34480 N 0.000
LOC_Os07g45820 Oryza sativa LOC_Os07g45820 N 0.000
LOC_Os08g11280 Oryza sativa LOC_Os08g11280 N 0.000
LOC_Os08g21030 Oryza sativa LOC_Os08g21030 N 0.000
LOC_Os08g22740 Oryza sativa LOC_Os08g22740 N 0.000
LOC_Os08g24970 Oryza sativa LOC_Os08g24970 N 0.000
LOC_Os09g14310 Oryza sativa LOC_Os09g14310 N 0.000
LOC_Os09g17250 Oryza sativa LOC_Os09g17250 N 0.000
LOC_Os10g10660 Oryza sativa LOC_Os10g10660 N 0.000
LOC_Os10g12816 Oryza sativa LOC_Os10g12816 N 0.000
LOC_Os10g24160 Oryza sativa LOC_Os10g24160 N 0.000
LOC_Os10g28910 Oryza sativa LOC_Os10g28910 N 0.000
LOC_Os11g33466 Oryza sativa LOC_Os11g33466 N 0.000
LOC_Os11g43090 Oryza sativa LOC_Os11g43090 N 0.000
LOC_Os11g43100 Oryza sativa LOC_Os11g43100 N 0.000
LOC_Os12g28380 Oryza sativa LOC_Os12g28380 N 0.000
LOC_Os12g30240 Oryza sativa LOC_Os12g30240 N 0.000
LOC_Os12g30890 Oryza sativa LOC_Os12g30890 N 0.000
LOC_Os12g35150 Oryza sativa LOC_Os12g35150 N 0.000
LOC_Os12g37720 Oryza sativa LOC_Os12g37720 N 0.000
MDP0000306612 Malus x domestica MDP0000306612 N 0.000
Medtr2g037320 Medicago truncatula Medtr2g037320 N 0.000
mgf009291m Mimulus guttatus mgf009291m N 0.000
PDK_20s1341991g003 Phoenix dactylifera PDK_20s1341991g003 N 0.000
PK11905.1 Cannabis sativa PK11905.1 N 0.000
ppa000469m Prunus persica ppa000469m N 0.000
SB08G018400 Sorghum bicolor Sb08g018400 N 0.000
XM_002865719.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000738 N 0.000
XP_001179009.1 Strongylocentrotus purpuratus XP_001179009.1 N 0.000
XP_001193544.1 Strongylocentrotus purpuratus XP_001193544.1 N 0.000