LOC_Os02g38000 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os02g38000 T10951_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g38000.1 CCHC ZF 478 495

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI08559 Xenopus laevis AAI08559 N 0.000
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.000
Bm1_55710 Brugia malayi Bm1_55710 N 0.000
CBG00419 Caenorhabditis briggsae CBG00419 N 0.000
CRE28738 Caenorhabditis remanei CRE28738 N 0.000
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.000
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.000
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.000
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.000
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.000
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.000
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.000
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.000
LOAG_00486 Loa loa LOAG_00486 N 0.000
LOC100057570 Equus caballus ENSECAG00000015558 N 0.000
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.000
Minc02944 Meloidogyne incognita Minc02944 N 0.000
Ppa-uaf-2 Pristionchus pacificus PPA01467 N 0.000
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.000
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.000
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.000
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.000
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.000
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.000
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.000
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.000
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.000
u2af1 Danio rerio ENSDARG00000015325 N 0.000
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.000
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.000
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.000
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.000
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.000
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.000
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.000
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.000
U2AF1 Homo sapiens ENSG00000160201 N 0.000
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.000
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.000
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.000
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.000
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.000
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.000
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.000
U2af1 Mus musculus ENSMUSG00000061613 N 0.000
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.000
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.000
uaf-2 Caenorhabditis elegans Y116A8C.35 N 0.000
WUBG_02195 Wuchereria bancrofti WUBG_02195 N 0.000
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.000