u2af1 (Danio rerio)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		ENSDARG00000015325 T00480_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000005582 CCCH ZF 13 39
ENSDARP00000005582 RRM 82 140
ENSDARP00000005582 CCCH ZF 148 174

Links

Other CCCH ZF,RRM family RBPs
Other Danio rerio RBPs

103 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.991
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.991
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.991
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.991
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.991
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.991
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.991
U2af1 Mus musculus ENSMUSG00000061613 N 0.991
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.991
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.991
U2AF1 Homo sapiens ENSG00000160201 N 0.991
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.991
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.991
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.991
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.982
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.982
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.982
AAI08559 Xenopus laevis AAI08559 N 0.973
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.973
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.973
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.965
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.965
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.965
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.965
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.965
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.965
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.965
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.965
LOC100057570 Equus caballus ENSECAG00000015558 N 0.965
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.965
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.965
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.965
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.947
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.947
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.947
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.938
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.912
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.904
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.904
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.904
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.904
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.904
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.904
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.904
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.895
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.895
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.895
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.886
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.886
U2AF1L4 Homo sapiens ENSG00000161265 N 0.877
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.876
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.876
PHUM349680 Pediculus humanus PHUM349680 N 0.876
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.876
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.872
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.871
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.868
184981 Helobdella robusta 184981 N 0.868
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.867
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.867
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.867
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.858
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.858
AGAP002956 Anopheles gambiae AGAP002956 N 0.858
AAEL006713 Aedes aegypti AAEL006713 N 0.858
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.858
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.858
GK14823 Drosophila willistoni FBgn0216828 N 0.841
GI15018 Drosophila mojavensis FBgn0137768 N 0.841
GL25824 Drosophila persimilis FBgn0163408 N 0.841
GM16679 Drosophila sechellia FBgn0171592 N 0.841
GD22967 Drosophila simulans FBgn0194360 N 0.841
GH10217 Drosophila grimshawi FBgn0117698 N 0.841
GG24659 Drosophila erecta FBgn0116791 N 0.841
U2af38 Drosophila melanogaster FBgn0017457 N 0.841
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.841
GF24893 Drosophila ananassae FBgn0101885 N 0.841
GE16227 Drosophila yakuba FBgn0233767 N 0.841
GJ17240 Drosophila virilis FBgn0204416 N 0.841
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.840
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.839
Smp_093100 Schistosoma mansoni Smp_093100 N 0.826
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.826
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.826
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.814
ENSGGOG00000000469 Gorilla gorilla ENSGGOG00000000469 N 0.807
XP_002167624.1 Hydra magnipapillata XP_002167624.1 N 0.805
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.794
ISCW019664 Ixodes scapularis ISCW019664 N 0.750
CAOG_00458 Capsaspora owczarzaki CAOG_00458 N 0.748
LOAG_00486 Loa loa LOAG_00486 N 0.741
Bm1_55710 Brugia malayi Bm1_55710 N 0.741
WUBG_02195 Wuchereria bancrofti WUBG_02195 N 0.741
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.740
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.739
CBG00419 Caenorhabditis briggsae CBG00419 N 0.726
uaf-2 Caenorhabditis elegans Y116A8C.35 N 0.726
CBN00865 Caenorhabditis brenneri CBN00865 N 0.726
CRE28738 Caenorhabditis remanei CRE28738 N 0.726
Minc02944 Meloidogyne incognita Minc02944 N 0.722
Aqu1.226671 Amphimedon queenslandica Aqu1.226671 N 0.714
RO3G_03843 Rhizopus oryzae RO3G_03843 N 0.706
estExt_Genewise1Plus.C_31771 Mucor circinelloides estExt_Genewise1Plus.C_31771 N 0.706