e_gw.8.587.1 (Branchiostoma floridae)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		e_gw.8.587.1 T00883_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.8.587.1 CCCH ZF 13 39
e_gw.8.587.1 RRM 83 142
e_gw.8.587.1 CCCH ZF 150 176

Links

Other CCCH ZF,RRM family RBPs
Other Branchiostoma floridae RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 1.000
AAI08559 Xenopus laevis AAI08559 N 0.974
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.965
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.956
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.956
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.956
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.956
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.956
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.956
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.956
U2AF1 Homo sapiens ENSG00000160201 N 0.956
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.956
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.956
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.956
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.956
U2af1 Mus musculus ENSMUSG00000061613 N 0.956
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.956
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.956
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.956
u2af1 Danio rerio ENSDARG00000015325 N 0.947
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.947
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.939
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.939
LOC100057570 Equus caballus ENSECAG00000015558 N 0.930
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.930
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.930
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.930
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.930
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.930
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.930
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.930
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.930
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.930
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.930
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.930
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.930
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.930
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.921
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.921
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.914
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.912
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.904
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.904
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.904
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.904
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.904
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.904
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.904
184981 Helobdella robusta 184981 N 0.904
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.897
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.896
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.887
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.886
U2AF1L4 Homo sapiens ENSG00000161265 N 0.878
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.877
PHUM349680 Pediculus humanus PHUM349680 N 0.877
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.877
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.868
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.868
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.868
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.868
AAEL006713 Aedes aegypti AAEL006713 N 0.868
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.868
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.868
AGAP002956 Anopheles gambiae AGAP002956 N 0.868
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.868
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.860
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.856
GL25824 Drosophila persimilis FBgn0163408 N 0.851
GI15018 Drosophila mojavensis FBgn0137768 N 0.851
GH10217 Drosophila grimshawi FBgn0117698 N 0.851
GF24893 Drosophila ananassae FBgn0101885 N 0.851
GG24659 Drosophila erecta FBgn0116791 N 0.851
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.851
GK14823 Drosophila willistoni FBgn0216828 N 0.851
U2af38 Drosophila melanogaster FBgn0017457 N 0.851
GE16227 Drosophila yakuba FBgn0233767 N 0.851
GJ17240 Drosophila virilis FBgn0204416 N 0.851
GM16679 Drosophila sechellia FBgn0171592 N 0.851
GD22967 Drosophila simulans FBgn0194360 N 0.851
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.849
Smp_093100 Schistosoma mansoni Smp_093100 N 0.843
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.833
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.818
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.818
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.810
XP_002167624.1 Hydra magnipapillata XP_002167624.1 N 0.807
ISCW019664 Ixodes scapularis ISCW019664 N 0.776
ENSGGOG00000000469 Gorilla gorilla ENSGGOG00000000469 N 0.774
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.773
LOAG_00486 Loa loa LOAG_00486 N 0.767
WUBG_02195 Wuchereria bancrofti WUBG_02195 N 0.767
Bm1_55710 Brugia malayi Bm1_55710 N 0.767
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.756
Aqu1.226671 Amphimedon queenslandica Aqu1.226671 N 0.731
CAOG_00458 Capsaspora owczarzaki CAOG_00458 N 0.730
estExt_Genewise1Plus.C_31771 Mucor circinelloides estExt_Genewise1Plus.C_31771 N 0.723
CRE28738 Caenorhabditis remanei CRE28738 N 0.718
CBN00865 Caenorhabditis brenneri CBN00865 N 0.718
CBG00419 Caenorhabditis briggsae CBG00419 N 0.718
uaf-2 Caenorhabditis elegans Y116A8C.35 N 0.718
Bm1_56100 Brugia malayi Bm1_56100 N 0.717
LOAG_10291 Loa loa LOAG_10291 N 0.717
WUBG_09132 Wuchereria bancrofti WUBG_09132 N 0.717
Minc02944 Meloidogyne incognita Minc02944 N 0.713
e_gw1.5.355.1 Batrachochytrium dendrobatidis e_gw1.5.355.1 N 0.706
RO3G_03843 Rhizopus oryzae RO3G_03843 N 0.706