Cucsa.135100 (Cucumis sativus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 Cucsa.135100 T13492_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.135100.1 CCHC ZF 942 959

Links

Other CCHC ZF family RBPs
Other Cucumis sativus RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
174274 Helobdella robusta 174274 N 0.722
184477 Helobdella robusta 184477 N 0.722
29889.m003353 Ricinus communis 29889.m003353 N 0.944
B9HIJ8_POPTR Populus trichocarpa POPTR_0008s10060 N 0.889
BGIOSIBCE036979 Oryza indica BGIOSIBCE036979 N 0.944
BRADI4G04650 Brachypodium distachyon BRADI4G04650 N 0.889
cassava22294.valid.m1 Manihot esculenta cassava22294.valid.m1 N 0.889
emb1441 Arabidopsis thaliana AT5G49930-TAIR-G N 0.722
estExt_fgenesh1_pg.C_5350001 Physcomitrella patens estExt_fgenesh1_pg.C_5350001 N 0.722
e_gw1.117.3.1 Physcomitrella patens e_gw1.117.3.1 N 0.722
Glyma09g03670.1 Glycine max Glyma09g03670.1 N 0.833
Glyma11g10610.1 Glycine max Glyma11g10610.1 N 0.722
Glyma15g14560.1 Glycine max Glyma15g14560.1 N 0.889
GRMZM2G038516 Zea mays GRMZM2G038516 N 0.944
GRMZM2G063544 Zea mays GRMZM2G063544 N 0.944
GSVIVG00034941001 Vitis vinifera GSVIVG00034941001 N 0.778
LjSGA_011995.1 Lotus japonicus LjSGA_011995.1 N 0.889
LOC_Os01g22300 Oryza sativa LOC_Os01g22300 N 0.722
LOC_Os01g23160 Oryza sativa LOC_Os01g23160 N 0.722
LOC_Os01g35360 Oryza sativa LOC_Os01g35360 N 0.722
LOC_Os01g35540 Oryza sativa LOC_Os01g35540 N 0.722
LOC_Os01g38010 Oryza sativa LOC_Os01g38010 N 0.722
LOC_Os01g47220 Oryza sativa LOC_Os01g47220 N 0.722
LOC_Os02g20080 Oryza sativa LOC_Os02g20080 N 0.722
LOC_Os04g05140 Oryza sativa LOC_Os04g05140 N 0.722
LOC_Os04g05270 Oryza sativa LOC_Os04g05270 N 0.722
LOC_Os04g06660 Oryza sativa LOC_Os04g06660 N 0.722
LOC_Os04g13330 Oryza sativa LOC_Os04g13330 N 0.722
LOC_Os04g19040 Oryza sativa LOC_Os04g19040 N 0.722
LOC_Os04g24998 Oryza sativa LOC_Os04g24998 N 0.722
LOC_Os04g38150 Oryza sativa LOC_Os04g38150 N 0.722
LOC_Os04g50140 Oryza sativa LOC_Os04g50140 N 0.722
LOC_Os05g16880 Oryza sativa LOC_Os05g16880 N 0.722
LOC_Os05g17450 Oryza sativa LOC_Os05g17450 N 0.722
LOC_Os05g17500 Oryza sativa LOC_Os05g17500 N 0.722
LOC_Os05g19810 Oryza sativa LOC_Os05g19810 N 0.722
LOC_Os05g19890 Oryza sativa LOC_Os05g19890 N 0.722
LOC_Os05g20690 Oryza sativa LOC_Os05g20690 N 0.722
LOC_Os06g03280 Oryza sativa LOC_Os06g03280 N 0.722
LOC_Os06g15070 Oryza sativa LOC_Os06g15070 N 0.722
LOC_Os06g15530 Oryza sativa LOC_Os06g15530 N 0.722
LOC_Os06g15950 Oryza sativa LOC_Os06g15950 N 0.722
LOC_Os06g36620 Oryza sativa LOC_Os06g36620 N 0.722
LOC_Os06g48410 Oryza sativa LOC_Os06g48410 N 0.722
LOC_Os06g48420 Oryza sativa LOC_Os06g48420 N 0.722
LOC_Os07g34480 Oryza sativa LOC_Os07g34480 N 0.722
LOC_Os07g45820 Oryza sativa LOC_Os07g45820 N 0.722
LOC_Os08g11280 Oryza sativa LOC_Os08g11280 N 0.722
LOC_Os08g21030 Oryza sativa LOC_Os08g21030 N 0.722
LOC_Os08g22740 Oryza sativa LOC_Os08g22740 N 0.722
LOC_Os08g24970 Oryza sativa LOC_Os08g24970 N 0.722
LOC_Os09g14310 Oryza sativa LOC_Os09g14310 N 0.722
LOC_Os09g17250 Oryza sativa LOC_Os09g17250 N 0.722
LOC_Os10g10660 Oryza sativa LOC_Os10g10660 N 0.722
LOC_Os10g12816 Oryza sativa LOC_Os10g12816 N 0.722
LOC_Os10g24160 Oryza sativa LOC_Os10g24160 N 0.722
LOC_Os10g28910 Oryza sativa LOC_Os10g28910 N 0.722
LOC_Os11g33466 Oryza sativa LOC_Os11g33466 N 0.722
LOC_Os11g43090 Oryza sativa LOC_Os11g43090 N 0.722
LOC_Os11g43100 Oryza sativa LOC_Os11g43100 N 0.722
LOC_Os12g28380 Oryza sativa LOC_Os12g28380 N 0.722
LOC_Os12g30240 Oryza sativa LOC_Os12g30240 N 0.722
LOC_Os12g30890 Oryza sativa LOC_Os12g30890 N 0.722
LOC_Os12g35150 Oryza sativa LOC_Os12g35150 N 0.722
LOC_Os12g37720 Oryza sativa LOC_Os12g37720 N 0.944
MDP0000306612 Malus x domestica MDP0000306612 N 0.889
Medtr2g037320 Medicago truncatula Medtr2g037320 N 0.889
mgf009291m Mimulus guttatus mgf009291m N 0.889
PDK_20s1341991g003 Phoenix dactylifera PDK_20s1341991g003 N 0.944
PK11905.1 Cannabis sativa PK11905.1 N 0.944
ppa000469m Prunus persica ppa000469m N 0.889
SB08G018400 Sorghum bicolor Sb08g018400 N 0.944
XM_002865719.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000738 N 0.722
XP_001179009.1 Strongylocentrotus purpuratus XP_001179009.1 N 0.722
XP_001193544.1 Strongylocentrotus purpuratus XP_001193544.1 N 0.722