GRMZM2G071253 (Zea mays)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 GRMZM2G071253 T15026_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G071253_P01 CCHC ZF 69 86
GRMZM2G071253_P01 CCHC ZF 94 111
GRMZM2G071253_P01 CCHC ZF 119 136
GRMZM2G071253_P01 CCHC ZF 146 163
GRMZM2G071253_P01 CCHC ZF 173 190

Links

Other CCHC ZF family RBPs
Other Zea mays RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30078.m002323 Ricinus communis 30078.m002323 N 0.000
AT2G37220 Arabidopsis thaliana AT2G37220-TAIR-G N 0.000
B9IFN7_POPTR Populus trichocarpa POPTR_0016s09190 N 0.000
B9MTC6_POPTR Populus trichocarpa POPTR_0006s12910 N 0.000
BGIOSIBCE011310 Oryza indica BGIOSIBCE011310 N 0.000
BGIOSIBCE025708 Oryza indica BGIOSIBCE025708 N 0.000
BRADI1G20440 Brachypodium distachyon BRADI1G20440 N 0.000
BRADI1G61250 Brachypodium distachyon BRADI1G61250 N 0.000
cassava17995.valid.m1 Manihot esculenta cassava17995.valid.m1 N 0.000
cassava23554.valid.m1 Manihot esculenta cassava23554.valid.m1 N 0.000
cassava23555.valid.m1 Manihot esculenta cassava23555.valid.m1 N 0.000
cassava23556.valid.m1 Manihot esculenta cassava23556.valid.m1 N 0.000
CP29 Arabidopsis thaliana AT3G53460-TAIR-G N 0.000
Cucsa.306870 Cucumis sativus Cucsa.306870 N 0.000
Glyma10g06620.1 Glycine max Glyma10g06620.1 N 0.000
Glyma13g20830.1 Glycine max Glyma13g20830.1 N 0.000
GRMZM2G042683 Zea mays GRMZM2G042683 N 0.000
GRMZM2G068715 Zea mays GRMZM2G068715 N 0.000
GRMZM2G158835 Zea mays GRMZM2G158835 N 0.000
LOC_Os03g25960 Oryza sativa LOC_Os03g25960 N 0.000
LOC_Os07g43810 Oryza sativa LOC_Os07g43810 N 0.000
Medtr1g076830 Medicago truncatula Medtr1g076830 N 0.000
mgf013487m Mimulus guttatus mgf013487m N 0.000
ppa009295m Prunus persica ppa009295m N 0.000
SB01G034120 Sorghum bicolor Sb01g034120 N 0.000
SB02G040260 Sorghum bicolor Sb02g040260 N 0.000
XM_002877875.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001832 N 0.000