CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
YBX1
(
Felis catus
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSFCAG00000015376
T16850_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSFCAP00000014258
CSD
1
50
NDTKEDVFVHQTAMNKNNARKYLHSIGDGETVEFDIVEGEGTEAANVTGP
Links
Other
CSD
family RBPs
Other
Felis catus
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R016025
Ailuropoda melanoleuca
Ame_R016025
I
0.796
Ame_R019252
Ailuropoda melanoleuca
Ame_R019252
I
0.811
CSDA
Felis catus
ENSFCAG00000018959
I
0.811
CSDA
Gorilla gorilla
ENSGGOG00000001352
I
0.796
CSDA
Tursiops truncatus
ENSTTRG00000008045
I
0.843
CSDA
Spermophilus tridecemlineatus
ENSSTOG00000002108
I
0.811
CSDA
Oryctolagus cuniculus
ENSOCUG00000001889
I
0.811
ENSETEG00000004125
Echinops telfairi
ENSETEG00000004125
I
0.811
ENSGGOG00000004758
Gorilla gorilla
ENSGGOG00000004758
I
0.811
ENSSARG00000007896
Sorex araneus
ENSSARG00000007896
I
0.811
YB-1
Homo sapiens
ENSG00000065978
D
0.811
YBOX1_RABIT
Oryctolagus cuniculus
ENSOCUG00000028047
I
0.827
YBX1
Procavia capensis
ENSPCAG00000008397
I
0.811
YBX2
Microcebus murinus
ENSMICG00000012453
I
0.804
YBX2
Otolemur garnettii
ENSOGAG00000004392
I
0.804
YBX2
Loxodonta africana
ENSLAFG00000014006
I
0.745
YBX2
Vicugna pacos
ENSVPAG00000003104
I
0.804