CSDA (Oryctolagus cuniculus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSOCUG00000001889 T16937_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.761
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.761
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.736
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.736
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.736
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000001627 CSD 62 114
ENSOCUP00000019910 CSD 70 134

Links

Other CSD family RBPs
Other Oryctolagus cuniculus RBPs

136 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.981
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.963
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.963
YB-1 Homo sapiens ENSG00000065978 D 0.962
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.962
YBX1 Procavia capensis ENSPCAG00000008397 I 0.962
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.962
CSDA Felis catus ENSFCAG00000018959 I 0.962
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.962
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.962
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.962
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.943
YBX2 Microcebus murinus ENSMICG00000012453 I 0.925
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.925
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.925
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.909
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.820
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.818
YBX1 Felis catus ENSFCAG00000015376 N 0.811
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.811
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.811
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.800
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.792
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.774
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.774
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.774
YBX1 Macropus eugenii ENSMEUG00000009893 N 0.774
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.769
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.768
CSDA Loxodonta africana ENSLAFG00000017247 I 0.757
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.755
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.755
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.755
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.755
CSDA Cavia porcellus ENSCPOG00000011329 I 0.750
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.750
Csda Dipodomys ordii ENSDORG00000009103 I 0.750
ybx1 Danio rerio ENSDARG00000004757 I 0.750
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.750
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.750
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.750
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.750
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.750
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.750
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.750
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.750
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.750
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.750
LOC100067336 Equus caballus ENSECAG00000023592 I 0.750
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.750
Csda Mus musculus ENSMUSG00000030189 I 0.750
CSDA Homo sapiens ENSG00000060138 I 0.750
Ybx1 Mus musculus ENSMUSG00000028639 I 0.750
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.750
CSDA Macaca mulatta ENSMMUG00000022469 I 0.750
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.750
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.750
YBX1 Microcebus murinus ENSMICG00000014984 I 0.750
LOC100065107 Equus caballus ENSECAG00000013777 I 0.750
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.750
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.750
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.750
CSDA Echinops telfairi ENSETEG00000002557 I 0.750
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.750
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.750
Q00436 Xenopus laevis Q00436 I 0.750
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.750
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.750
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.750
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.750
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.750
AAH41191 Xenopus laevis AAH41191 I 0.750
AAA49715 Xenopus laevis AAA49715 I 0.750
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.750
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.750
CSDA Sus scrofa ENSSSCG00000000633 I 0.750
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.750
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.750
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.750
CSDA Pan troglodytes ENSPTRG00000004681 I 0.750
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.750
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.750
Csda Rattus norvegicus ENSRNOG00000005480 I 0.750
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.750
AAH42217 Xenopus laevis AAH42217 I 0.750
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.750
CAA42778 Xenopus laevis CAA42778 I 0.750
AAI06324 Xenopus laevis AAI06324 I 0.750
P21573 Xenopus laevis P21573 I 0.750
AAI30161 Xenopus laevis AAI30161 I 0.750
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.746
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.736
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.736
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.736
P21574 Xenopus laevis P21574 I 0.736
AAI69704 Xenopus laevis AAI69704 I 0.736
ybx2-a Xenopus laevis AAI69706 D 0.736
AAA49716 Xenopus laevis AAA49716 I 0.736
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.736
CSDA Monodelphis domestica ENSMODG00000018248 I 0.736
AAI55915 Xenopus laevis AAI55915 I 0.736
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.736
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.736
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.722
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.722
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.722
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.722
YBX2 Procavia capensis ENSPCAG00000008019 I 0.722
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.722
Ybx2 Mus musculus ENSMUSG00000018554 I 0.722
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.722
YBX2 Canis familiaris ENSCAFG00000016128 I 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.722
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.722
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.722
LOC100072964 Equus caballus ENSECAG00000009996 I 0.722
AAA49924 Xenopus laevis AAA49924 I 0.722
AAI55914 Xenopus laevis AAI55914 I 0.722
P45441 Xenopus laevis P45441 I 0.722
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.722
YBX2 Sus scrofa ENSSSCG00000017938 I 0.722
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.722
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.718
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.717
YBX2 Homo sapiens ENSG00000006047 D 0.708
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.708
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.708
YBX2 Sorex araneus ENSSARG00000000488 I 0.708
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.708
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.708
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.708
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.708
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.708
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.704
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.704