Ame_R016025 (Ailuropoda melanoleuca)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 Ame_R016025 T17359_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.732
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R016025 CSD 165 218

Links

Other CSD family RBPs
Other Ailuropoda melanoleuca RBPs

103 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.963
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.963
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.963
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.944
YB-1 Homo sapiens ENSG00000065978 D 0.944
CSDA Felis catus ENSFCAG00000018959 I 0.944
YBX1 Procavia capensis ENSPCAG00000008397 I 0.944
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.944
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.944
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.944
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.944
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.926
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.909
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.907
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.907
YBX2 Microcebus murinus ENSMICG00000012453 I 0.907
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.806
YBX1 Felis catus ENSFCAG00000015376 N 0.796
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.796
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.796
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.788
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.788
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.778
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.759
YBX1 Macropus eugenii ENSMEUG00000009893 N 0.759
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.759
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.759
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.750
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.743
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.741
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.741
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.741
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.741
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.738
CSDA Loxodonta africana ENSLAFG00000017247 I 0.732
Ybx1 Mus musculus ENSMUSG00000028639 I 0.722
AAI06324 Xenopus laevis AAI06324 I 0.722
Csda Mus musculus ENSMUSG00000030189 I 0.722
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.722
AAI30161 Xenopus laevis AAI30161 I 0.722
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.722
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.722
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.722
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.722
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.722
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.722
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.722
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.722
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.722
AAA49715 Xenopus laevis AAA49715 I 0.722
CSDA Sus scrofa ENSSSCG00000000633 I 0.722
AAH41191 Xenopus laevis AAH41191 I 0.722
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.722
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.722
AAH42217 Xenopus laevis AAH42217 I 0.722
CSDA Pan troglodytes ENSPTRG00000004681 I 0.722
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.722
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.722
Csda Rattus norvegicus ENSRNOG00000005480 I 0.722
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.722
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.722
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.722
LOC100065107 Equus caballus ENSECAG00000013777 I 0.722
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.722
LOC100067336 Equus caballus ENSECAG00000023592 I 0.722
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.722
CSDA Echinops telfairi ENSETEG00000002557 I 0.722
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.722
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.722
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.722
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.722
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.722
CSDA Cavia porcellus ENSCPOG00000011329 I 0.722
ybx1 Danio rerio ENSDARG00000004757 I 0.722
Csda Dipodomys ordii ENSDORG00000009103 I 0.722
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.722
P21573 Xenopus laevis P21573 I 0.722
YBX1 Microcebus murinus ENSMICG00000014984 I 0.722
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.722
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.722
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.722
CSDA Macaca mulatta ENSMMUG00000022469 I 0.722
CAA42778 Xenopus laevis CAA42778 I 0.722
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.722
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.722
CSDA Homo sapiens ENSG00000060138 I 0.722
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.722
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.722
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.722
Q00436 Xenopus laevis Q00436 I 0.722
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.718
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.708
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.708
AAI55915 Xenopus laevis AAI55915 I 0.708
P21574 Xenopus laevis P21574 I 0.708
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.708
AAI69704 Xenopus laevis AAI69704 I 0.708
ybx2-a Xenopus laevis AAI69706 D 0.708
AAA49716 Xenopus laevis AAA49716 I 0.708
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.708
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.708
CSDA Monodelphis domestica ENSMODG00000018248 I 0.708
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.704