YBOX1_RABIT (Oryctolagus cuniculus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSOCUG00000028047 T16948_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.732
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000019994 CSD 1 52

Links

Other CSD family RBPs
Other Oryctolagus cuniculus RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.981
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.981
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.963
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.963
YB-1 Homo sapiens ENSG00000065978 D 0.962
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.962
YBX1 Procavia capensis ENSPCAG00000008397 I 0.962
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.962
CSDA Felis catus ENSFCAG00000018959 I 0.962
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.962
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.962
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.943
YBX2 Microcebus murinus ENSMICG00000012453 I 0.942
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.942
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.942
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.909
YBX2 Pteropus vampyrus ENSPVAG00000005050 N 0.827
YBX1 Felis catus ENSFCAG00000015376 N 0.827
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 N 0.827
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.820
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.812
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 N 0.808
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.800
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.788
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 N 0.788
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 N 0.788
YBX1 Macropus eugenii ENSMEUG00000009893 N 0.788
Ybx1 Dipodomys ordii ENSDORG00000016627 N 0.769
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.769
Ame_R016026 Ailuropoda melanoleuca Ame_R016026 N 0.769
YBX1 Tupaia belangeri ENSTBEG00000015642 N 0.769
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.762
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.754
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.750
CSDA Loxodonta africana ENSLAFG00000017247 I 0.743
Csda Dipodomys ordii ENSDORG00000009103 I 0.732
ybx1 Danio rerio ENSDARG00000004757 I 0.732
Csda Mus musculus ENSMUSG00000030189 I 0.732
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.732
LOC100065107 Equus caballus ENSECAG00000013777 I 0.732
CSDA Cavia porcellus ENSCPOG00000011329 I 0.732
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.732
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.732
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.732
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.732
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.732
LOC100067336 Equus caballus ENSECAG00000023592 I 0.732
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.732
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.732
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.732
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.732
YBX1 Microcebus murinus ENSMICG00000014984 I 0.732
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.732
CSDA Homo sapiens ENSG00000060138 I 0.732
CSDA Macaca mulatta ENSMMUG00000022469 I 0.732
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.732
CSDA Echinops telfairi ENSETEG00000002557 I 0.732
Ybx1 Mus musculus ENSMUSG00000028639 I 0.732
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.732
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.732
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.732
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.732
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.732
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.732
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.732
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.732
CAA42778 Xenopus laevis CAA42778 I 0.732
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.732
AAI30161 Xenopus laevis AAI30161 I 0.732
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.732
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.732
AAH41191 Xenopus laevis AAH41191 I 0.732
AAH42217 Xenopus laevis AAH42217 I 0.732
AAI06324 Xenopus laevis AAI06324 I 0.732
CSDA Sus scrofa ENSSSCG00000000633 I 0.732
P21573 Xenopus laevis P21573 I 0.732
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.732
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.732
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.732
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.732
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.732
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.732
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.732
CSDA Pan troglodytes ENSPTRG00000004681 I 0.732
Csda Rattus norvegicus ENSRNOG00000005480 I 0.732
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.732
Q00436 Xenopus laevis Q00436 I 0.732
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.732
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.732
AAA49715 Xenopus laevis AAA49715 I 0.732
ybx2 Xenopus tropicalis ENSXETG00000025267 N 0.731
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.729
P21574 Xenopus laevis P21574 I 0.718
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.718
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.718
CSDA Monodelphis domestica ENSMODG00000018248 I 0.718
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.718
ybx2-a Xenopus laevis AAI69706 D 0.718
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.718
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.718
AAI55915 Xenopus laevis AAI55915 I 0.718
AAA49716 Xenopus laevis AAA49716 I 0.718
AAI69704 Xenopus laevis AAI69704 I 0.718
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.704
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.704
P45441 Xenopus laevis P45441 I 0.704
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.704
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.704
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.704
csda Xenopus tropicalis ENSXETG00000016239 I 0.704
YBX2 Procavia capensis ENSPCAG00000008019 I 0.704
AAA49924 Xenopus laevis AAA49924 I 0.704
AAI55914 Xenopus laevis AAI55914 I 0.704
LOC100072964 Equus caballus ENSECAG00000009996 I 0.704
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.704
YBX2 Sus scrofa ENSSSCG00000017938 I 0.704
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.704
YBX2 Canis familiaris ENSCAFG00000016128 I 0.704
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.704
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.704
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.704
Ybx2 Mus musculus ENSMUSG00000018554 I 0.704